BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0307900 Os02g0307900|Os02g0307900
         (434 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0307900  Conserved hypothetical protein                      644   0.0  
Os06g0165300  Conserved hypothetical protein                      202   3e-52
Os06g0174800  RNA-directed DNA polymerase (Reverse transcrip...   172   4e-43
Os06g0174900                                                      151   1e-36

>Os02g0307900 Conserved hypothetical protein
          Length = 434

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/390 (84%), Positives = 330/390 (84%)

Query: 31  TYFDGDDDEGDVKPAVTQHWRYDARAAASYGGGEDVKPAVVVKQXXXXXXXXXXXXHDRA 90
           TYFDGDDDEGDVKPAVTQHWRYDARAAASYGGGEDVKPAVVVKQ            HDRA
Sbjct: 31  TYFDGDDDEGDVKPAVTQHWRYDARAAASYGGGEDVKPAVVVKQPPLPRPRVGRGVHDRA 90

Query: 91  EETTALSWPVVEPFRSTLRTQESLAGIRARYSVPEGFGLHPAGANQTACXXXXXXXXXXX 150
           EETTALSWPVVEPFRSTLRTQESLAGIRARYSVPEGFGLHPAGANQTAC           
Sbjct: 91  EETTALSWPVVEPFRSTLRTQESLAGIRARYSVPEGFGLHPAGANQTACAPPPVTPRGGR 150

Query: 151 XXXXXXXXXXICVYAQAFAAGMRLPLHPFVSDALAHFGIAPSQLAPNGWRVLAGFAVLCH 210
                     ICVYAQAFAAGMRLPLHPFVSDALAHFGIAPSQLAPNGWRVLAGFAVLCH
Sbjct: 151 GGGAAAAAVPICVYAQAFAAGMRLPLHPFVSDALAHFGIAPSQLAPNGWRVLAGFAVLCH 210

Query: 211 FRGVGAPSLPVFRHFFTLAPLPKGKGWYSFRARESVPALFTGLPSSVKAWKEEFLFVSPP 270
           FRGVGAPSLPVFRHFFTLAPLPKGKGWYSFRARESVPALFTGLPSSVKAWKEEFLFVSPP
Sbjct: 211 FRGVGAPSLPVFRHFFTLAPLPKGKGWYSFRARESVPALFTGLPSSVKAWKEEFLFVSPP 270

Query: 271 PAAPWRCPVRWGTPSKEATSDPALTEREAAVARRLTQGQGVVDLKTYLSESNLVAAKISS 330
           PAAPWRCPVRWGTPSKEATSDPALTEREAAVARRLTQGQGVVDLKTYLSESNLVAAKISS
Sbjct: 271 PAAPWRCPVRWGTPSKEATSDPALTEREAAVARRLTQGQGVVDLKTYLSESNLVAAKISS 330

Query: 331 APACLGGTEASRGSSVAAGKKRKVLGDGVSTGGGVLRSEXXXXXXXXXXXXGEISRLKAQ 390
           APACLGGTEASRGSSVAAGKKRKVLGDGVSTGGGVLRSE            GEISRLKAQ
Sbjct: 331 APACLGGTEASRGSSVAAGKKRKVLGDGVSTGGGVLRSELQAKDKALAKAQGEISRLKAQ 390

Query: 391 LGSAKXXXXXXXXXXXXXXXKLGTQVLKSD 420
           LGSAK               KLGTQVLKSD
Sbjct: 391 LGSAKARELEEARQALEYERKLGTQVLKSD 420



>Os06g0165300 Conserved hypothetical protein
          Length = 542

 Score =  202 bits (515), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/229 (48%), Positives = 142/229 (62%), Gaps = 21/229 (9%)

Query: 100 VVEPFRSTLRTQESLAGIRARYSVPEGFGLHPAGANQTACXXXXXXXXXXXXXXXXXXXX 159
           + +   S+LRTQE++  +  ++ VP+GF   PAG +  AC                    
Sbjct: 42  IADRIASSLRTQEAVDALCKKHGVPKGFAARPAG-DLRACSTPPPGA------------- 87

Query: 160 XICVYAQAFAAGMRLPLHPFVSDALAHFGIAPSQLAPNGWRVLAGFAVLCHFRGVGAPSL 219
            +CVY  A  AGMR+PLHPF  D L HFG+APS++ PNGWR++AGF VL H  GV  PSL
Sbjct: 88  -VCVYKDALEAGMRVPLHPFACDVLRHFGLAPSEVTPNGWRIMAGFLVLSHHAGV-PPSL 145

Query: 220 PVFRHFFTLAPLPKGKGWYSFRARESVPALFTGLPSSVKAWKEEFLFVSPPPAAPWRCPV 279
            VFRHFF L  L K  GWY FR +++V  LFTG+P+ +K WKE F F+S   +APW C V
Sbjct: 146 AVFRHFFKLC-LFKSNGWYHFRGKDTVGLLFTGMPTHLKGWKEGFFFLS--SSAPWPCQV 202

Query: 280 RW-GTPSKEATSDPALT-EREAAVARRLTQGQGVVDLKTYLSESNLVAA 326
           RW G PSK + +DP LT E E   A+ L + +  VDL+TYL+ESNL AA
Sbjct: 203 RWGGPPSKSSIADPVLTGEEEKWAAKLLDKHRAAVDLRTYLTESNLAAA 251



>Os06g0174800 RNA-directed DNA polymerase (Reverse transcriptase) domain
           containing protein
          Length = 873

 Score =  172 bits (436), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 107/234 (45%), Positives = 130/234 (55%), Gaps = 27/234 (11%)

Query: 100 VVEPFRSTLRTQESLAGIRARYSVPEGFGLHPAGANQTACXXXXXXXXXXXXXXXXXXXX 159
           V +   S+LRTQE++  +  +Y V   F   PAG +  AC                    
Sbjct: 45  VADHIASSLRTQEAVDAVCKKYGVLAEFAARPAG-DLRACSAPPPGAA------------ 91

Query: 160 XICVYAQAFAAGMRLPLHPFVSDALAHFGIAPSQLAPNGWRVLAGFAVLCHFRGVGAPSL 219
             CVYA+A  AGMRLPLHPF  + L H G+APSQ+ PNGWRV+AGF +L H      PSL
Sbjct: 92  --CVYARALEAGMRLPLHPFACELLRHLGVAPSQITPNGWRVVAGFLLLSH-HAAAPPSL 148

Query: 220 PVFRHFFTLAPLPKGKGWYSFRARESVPA---LFTGLPSSVKAWKEEFLFVSPPPAAPWR 276
            VFR FF L  L K  GWY FR +    A   LFTGLP  +K WK  F FVS P  +PW 
Sbjct: 149 AVFRRFFRLF-LSKLNGWYHFRGKRGAGADGVLFTGLP-KLKGWKGGFFFVSSP--SPWP 204

Query: 277 CPVRWG--TPSKEATSDPALTEREAAVARRLTQGQG--VVDLKTYLSESNLVAA 326
           C VRWG   PSK +T++P L+  E  +A +L    G   VDL+TYL ESNL A 
Sbjct: 205 CQVRWGGPPPSKSSTAEPVLSGEEMELAGKLLHLHGGAAVDLRTYLCESNLAAV 258



>Os06g0174900 
          Length = 569

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/242 (43%), Positives = 124/242 (51%), Gaps = 28/242 (11%)

Query: 100 VVEPFRSTLRTQESLAGIRARYSVPEGFGLHPAGANQTACXXXXXXXXXXXXXXXXXXXX 159
           V E   S LRT ++L  I  R S+P GF    AG                          
Sbjct: 39  VAEKTTSWLRTADALRDITGRCSIPRGFTALLAG-------------DLPACAPPPPGAA 85

Query: 160 XICVYAQAFAAGMRLPLHPFVSDALAHFGIAPSQLAPNGWRVLAGFAVLCHFRGVG---A 216
            + V A      MRLPL PF +  LAHFG+APSQL PN WR+LAGFA LC   GV     
Sbjct: 86  FVYVAAMEEERLMRLPLQPFFAAVLAHFGLAPSQLTPNAWRLLAGFAALCRRAGVAPPPP 145

Query: 217 PSLPVFRHFFTLAPLPKGKGWYSFRAR--ESVPALFTGLPSSVKA--WKEEFLFVSPPPA 272
           P L VFRHFFT    P G  WYSFRAR   S  +LFT L +      WKE+F+ VS P  
Sbjct: 146 PPLTVFRHFFTAIGCPPG-AWYSFRARGSASTGSLFTRLSNVTMNPWWKEQFILVSSP-- 202

Query: 273 APWRCPVRWGTPSKEATSDPALT--EREAAVARRLTQGQGVVDLKTYLSESNLVAAKISS 330
           APW CPVRWG P K A   P LT  E++ A    L +G  ++DL TY   +++ AAK   
Sbjct: 203 APWPCPVRWGKPRKHANFPPVLTTAEKDMATKLLLARGSSLIDLTTY---NSIAAAKNII 259

Query: 331 AP 332
           AP
Sbjct: 260 AP 261



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,792,786
Number of extensions: 574998
Number of successful extensions: 2137
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2119
Number of HSP's successfully gapped: 4
Length of query: 434
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 330
Effective length of database: 11,605,545
Effective search space: 3829829850
Effective search space used: 3829829850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)