BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0152400 Os06g0152400|AK064640
(236 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0152400 Similar to Hexaprenyldihydroxybenzoate methylt... 398 e-111
Os06g0152300 Similar to Hexaprenyldihydroxybenzoate methylt... 254 5e-68
>Os06g0152400 Similar to Hexaprenyldihydroxybenzoate methyltransferase,
mitochondrial precursor (EC 2.1.1.114)
(Dihydroxyhexaprenylbenzoate methyltransferase) (3,4-
dihydroxy-5-hexaprenylbenzoate methyltransferase) (DHHB
methyltransferase) (DHHB-MT) (DHHB-MTase)
Length = 236
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/211 (93%), Positives = 197/211 (93%)
Query: 26 GVRLAEHGXXXXXXXXXXXXXXTQKDGAVRTPGGGSAASSLNPAEVAHFASFAETWWDTE 85
GVRLAEHG TQKDGAVRTPGGGSAASSLNPAEVAHFASFAETWWDTE
Sbjct: 26 GVRLAEHGQSPPQSAPPPPSPATQKDGAVRTPGGGSAASSLNPAEVAHFASFAETWWDTE 85
Query: 86 GPFKHLLVMNPTRVSFIRSILCKHFRRDPNSSKPLEGLKIIDVGCAAGMLSEPLARMGAT 145
GPFKHLLVMNPTRVSFIRSILCKHFRRDPNSSKPLEGLKIIDVGCAAGMLSEPLARMGAT
Sbjct: 86 GPFKHLLVMNPTRVSFIRSILCKHFRRDPNSSKPLEGLKIIDVGCAAGMLSEPLARMGAT 145
Query: 146 VTGIDAADESIKIARVHAASDPLTASIEYLCTTAEDLVKENKQFDAVICLEAAGIIFKTL 205
VTGIDAADESIKIARVHAASDPLTASIEYLCTTAEDLVKENKQFDAVICLEAAGIIFKTL
Sbjct: 146 VTGIDAADESIKIARVHAASDPLTASIEYLCTTAEDLVKENKQFDAVICLEAAGIIFKTL 205
Query: 206 KFRDSLSISERGAFLLSYISILENALVVLYS 236
KFRDSLSISERGAFLLSYISILENALVVLYS
Sbjct: 206 KFRDSLSISERGAFLLSYISILENALVVLYS 236
>Os06g0152300 Similar to Hexaprenyldihydroxybenzoate methyltransferase,
mitochondrial precursor (EC 2.1.1.114)
(Dihydroxyhexaprenylbenzoate methyltransferase) (3,4-
dihydroxy-5-hexaprenylbenzoate methyltransferase) (DHHB
methyltransferase) (DHHB-MT) (DHHB-MTase)
Length = 327
Score = 254 bits (648), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 125/171 (73%), Positives = 139/171 (81%), Gaps = 2/171 (1%)
Query: 57 PGGGSAASSLNPAEVAHFASFAETWWDTEGPFKHLLVMNPTRVSFIRSILCKHFRRDPNS 116
P GGS SSLNPAEVA FA+ AETWWD+EGPFK L +MNPTR+SFIRS LC+HFRRDPNS
Sbjct: 70 PAGGSTVSSLNPAEVAKFAAIAETWWDSEGPFKPLHLMNPTRLSFIRSTLCRHFRRDPNS 129
Query: 117 SKPLEGLKIIDVGCAAGMLSEPLARMGATVTGIDAADESIKIARVHAASDPLTASIEYLC 176
SKPLEGLK+IDVGC G+LSEPLARMGATVTGIDA D++IKIARVHAASDP TASIEY C
Sbjct: 130 SKPLEGLKVIDVGCGGGILSEPLARMGATVTGIDAVDKNIKIARVHAASDPSTASIEYFC 189
Query: 177 TTAEDLVKENKQFDAVICLEAAGIIFKTLKFRDSLS--ISERGAFLLSYIS 225
TTAEDLVKENKQFDAVI LE + F +SLS GA ++S I+
Sbjct: 190 TTAEDLVKENKQFDAVISLEVIEHVANPSGFCESLSALTVPNGATVISTIN 240
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,216,170
Number of extensions: 231993
Number of successful extensions: 689
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,918,829
Effective search space: 1644798402
Effective search space used: 1644798402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)