BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0152300 Os06g0152300|AK102929
         (327 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0152300  Similar to Hexaprenyldihydroxybenzoate methylt...   640   0.0  
Os06g0152400  Similar to Hexaprenyldihydroxybenzoate methylt...   256   2e-68

>Os06g0152300 Similar to Hexaprenyldihydroxybenzoate methyltransferase,
           mitochondrial precursor (EC 2.1.1.114)
           (Dihydroxyhexaprenylbenzoate methyltransferase) (3,4-
           dihydroxy-5-hexaprenylbenzoate methyltransferase) (DHHB
           methyltransferase) (DHHB-MT) (DHHB-MTase)
          Length = 327

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/327 (96%), Positives = 314/327 (96%)

Query: 1   MLRRVAPSLRRAILTSSAHGRAGAQLTEPGLSPRHALLPQWRLCSSAASTNXXXXXXXXX 60
           MLRRVAPSLRRAILTSSAHGRAGAQLTEPGLSPRHALLPQWRLCSSAASTN         
Sbjct: 1   MLRRVAPSLRRAILTSSAHGRAGAQLTEPGLSPRHALLPQWRLCSSAASTNSPPPPPPPP 60

Query: 61  XXXXQGTPRPAGGSTVSSLNPAEVAKFAAIAETWWDSEGPFKPLHLMNPTRLSFIRSTLC 120
               QGTPRPAGGSTVSSLNPAEVAKFAAIAETWWDSEGPFKPLHLMNPTRLSFIRSTLC
Sbjct: 61  SSPPQGTPRPAGGSTVSSLNPAEVAKFAAIAETWWDSEGPFKPLHLMNPTRLSFIRSTLC 120

Query: 121 RHFRRDPNSSKPLEGLKVIDVGCGGGILSEPLARMGATVTGIDAVDKNIKIARVHAASDP 180
           RHFRRDPNSSKPLEGLKVIDVGCGGGILSEPLARMGATVTGIDAVDKNIKIARVHAASDP
Sbjct: 121 RHFRRDPNSSKPLEGLKVIDVGCGGGILSEPLARMGATVTGIDAVDKNIKIARVHAASDP 180

Query: 181 STASIEYFCTTAEDLVKENKQFDAVISLEVIEHVANPSGFCESLSALTVPNGATVISTIN 240
           STASIEYFCTTAEDLVKENKQFDAVISLEVIEHVANPSGFCESLSALTVPNGATVISTIN
Sbjct: 181 STASIEYFCTTAEDLVKENKQFDAVISLEVIEHVANPSGFCESLSALTVPNGATVISTIN 240

Query: 241 RSMRAYATAIVAAEYILNWLPKGTHQWSKLVTPEELVLILERASISVQEMAGFVYNPLRG 300
           RSMRAYATAIVAAEYILNWLPKGTHQWSKLVTPEELVLILERASISVQEMAGFVYNPLRG
Sbjct: 241 RSMRAYATAIVAAEYILNWLPKGTHQWSKLVTPEELVLILERASISVQEMAGFVYNPLRG 300

Query: 301 EWSLSDDLTVNYIAYGMKKVETPSESN 327
           EWSLSDDLTVNYIAYGMKKVETPSESN
Sbjct: 301 EWSLSDDLTVNYIAYGMKKVETPSESN 327



>Os06g0152400 Similar to Hexaprenyldihydroxybenzoate methyltransferase,
           mitochondrial precursor (EC 2.1.1.114)
           (Dihydroxyhexaprenylbenzoate methyltransferase) (3,4-
           dihydroxy-5-hexaprenylbenzoate methyltransferase) (DHHB
           methyltransferase) (DHHB-MT) (DHHB-MTase)
          Length = 236

 Score =  256 bits (654), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 144/241 (59%), Positives = 162/241 (67%), Gaps = 17/241 (7%)

Query: 1   MLRRVAPSLRRAILTSSAHGRAGAQLTEPGLSPRHALLPQWRLCSSAASTNXXXXXXXXX 60
           MLRR+ P LRRA+  SS+   A          PR  +    RL     S           
Sbjct: 1   MLRRLPPCLRRALPASSSSTSA----------PRRGV----RLAEHGQSPPQSAPPPPSP 46

Query: 61  XXXXQGTPR-PAGGSTVSSLNPAEVAKFAAIAETWWDSEGPFKPLHLMNPTRLSFIRSTL 119
                G  R P GGS  SSLNPAEVA FA+ AETWWD+EGPFK L +MNPTR+SFIRS L
Sbjct: 47  ATQKDGAVRTPGGGSAASSLNPAEVAHFASFAETWWDTEGPFKHLLVMNPTRVSFIRSIL 106

Query: 120 CRHFRRDPNSSKPLEGLKVIDVGCGGGILSEPLARMGATVTGIDAVDKNIKIARVHAASD 179
           C+HFRRDPNSSKPLEGLK+IDVGC  G+LSEPLARMGATVTGIDA D++IKIARVHAASD
Sbjct: 107 CKHFRRDPNSSKPLEGLKIIDVGCAAGMLSEPLARMGATVTGIDAADESIKIARVHAASD 166

Query: 180 PSTASIEYFCTTAEDLVKENKQFDAVISLEVIEHVANPSGFCESLSALTVPNGATVISTI 239
           P TASIEY CTTAEDLVKENKQFDAVI LE    +     F +SLS      GA ++S I
Sbjct: 167 PLTASIEYLCTTAEDLVKENKQFDAVICLEAAGIIFKTLKFRDSLS--ISERGAFLLSYI 224

Query: 240 N 240
           +
Sbjct: 225 S 225



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,201,052
Number of extensions: 441500
Number of successful extensions: 1145
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1144
Number of HSP's successfully gapped: 2
Length of query: 327
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 226
Effective length of database: 11,762,187
Effective search space: 2658254262
Effective search space used: 2658254262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)