BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0149400 Os06g0149400|AK071177
(378 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0149400 Similar to Chitinase A 459 e-129
Os05g0539700 Similar to Nucleosome assembly protein 1 362 e-100
Os06g0611700 325 5e-89
Os01g0711800 Nucleosome assembly protein (NAP) family protein 323 2e-88
Os05g0235600 70 3e-12
Os04g0459700 Nucleosome assembly protein (NAP) family protein 65 8e-11
>Os06g0149400 Similar to Chitinase A
Length = 378
Score = 459 bits (1182), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/309 (76%), Positives = 235/309 (76%)
Query: 1 MGGDKENXXXXXXXXXXXXXXXXXXXXXXXXXVNALKDKLQSLAGQHTDVLEALSPNVRK 60
MGGDKEN VNALKDKLQSLAGQHTDVLEALSPNVRK
Sbjct: 1 MGGDKENLDLSDLNASLPAAAAALSAEDRAGLVNALKDKLQSLAGQHTDVLEALSPNVRK 60
Query: 61 RVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRYNIXXXXXXXXXXXXXPAS 120
RVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRYNI PAS
Sbjct: 61 RVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRYNIVNGVVEVDGGNDEPAS 120
Query: 121 ENAAEGKDADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGFKLD 180
ENAAEGKDADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGFKLD
Sbjct: 121 ENAAEGKDADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGFKLD 180
Query: 181 FFFDTNPFFKNSVLTKTYHMVDEDEPILEKAIGTEIEWYPXXXXXXXXXXXXXXXXXXXX 240
FFFDTNPFFKNSVLTKTYHMVDEDEPILEKAIGTEIEWYP
Sbjct: 181 FFFDTNPFFKNSVLTKTYHMVDEDEPILEKAIGTEIEWYPGKNLTQKILKKKPKKGSKNA 240
Query: 241 XXXTKTEVCESFFNFFSPPQVPXXXXXXXXXXXXXLQGQMEHDYDIGTTIRDKIIPHAVS 300
TKTEVCESFFNFFSPPQVP LQGQMEHDYDIGTTIRDKIIPHAVS
Sbjct: 241 KPITKTEVCESFFNFFSPPQVPDDDEDIDEDTADELQGQMEHDYDIGTTIRDKIIPHAVS 300
Query: 301 WFTGEAVQA 309
WFTGEAVQA
Sbjct: 301 WFTGEAVQA 309
>Os05g0539700 Similar to Nucleosome assembly protein 1
Length = 364
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/276 (65%), Positives = 200/276 (72%), Gaps = 2/276 (0%)
Query: 33 VNALKDKLQSLAGQHTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQK 92
V ++K+ LQ LA +HTDVLE+L P VRKRVE LREIQ QHD++E KFFEERAALEAKYQK
Sbjct: 32 VESIKNTLQGLAARHTDVLESLEPKVRKRVEVLREIQSQHDDLEAKFFEERAALEAKYQK 91
Query: 93 LYEPLYTKRYNIXXXXXXXXXXXXXPASENAAEGKDADAKGVPDFWLTAMKTNEVLSEEI 152
+YEPLY+KRY I A E AE K+ KGVP+FWL AMK +E+LSEEI
Sbjct: 92 MYEPLYSKRYEIVNGVVEVDGVTKEAADETPAEQKEE--KGVPEFWLNAMKNHEILSEEI 149
Query: 153 QERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNPFFKNSVLTKTYHMVDEDEPILEKAI 212
QERDE ALKYLKDIKW RI +PKGFKL+F+FDTNPFFKNSVLTKTYHM+DEDEPILEKAI
Sbjct: 150 QERDEEALKYLKDIKWYRISEPKGFKLEFYFDTNPFFKNSVLTKTYHMIDEDEPILEKAI 209
Query: 213 GTEIEWYPXXXXXXXXXXXXXXXXXXXXXXXTKTEVCESFFNFFSPPQVPXXXXXXXXXX 272
GTEIEW+P TKTE CESFFNFFSPPQVP
Sbjct: 210 GTEIEWFPGKCLTQKVLKKKPKKGSKNTKPITKTENCESFFNFFSPPQVPDDDEEIDEDT 269
Query: 273 XXXLQGQMEHDYDIGTTIRDKIIPHAVSWFTGEAVQ 308
LQ QME DYDIG+TIRDKIIPHAVSWFTGEA Q
Sbjct: 270 AEQLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAAQ 305
>Os06g0611700
Length = 408
Score = 325 bits (832), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 170/277 (61%), Positives = 187/277 (67%), Gaps = 34/277 (12%)
Query: 33 VNALKDKLQSLAGQHTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQK 92
V LK+KLQ+LA QH DVLE+L+P+VRKRV+ L EIQ QHDE+E+KFFEE+AALEAKYQK
Sbjct: 139 VETLKNKLQALAEQHVDVLESLAPSVRKRVDVLMEIQSQHDELEVKFFEEKAALEAKYQK 198
Query: 93 LYEPLYTKRYNIXXXXXXXXXXXXXPASENAAEGKDADAKGVPDFWLTAMKTNEVLSEEI 152
LY PLY+K KGVPDFWL AMK NE+L+EEI
Sbjct: 199 LYGPLYSKE------------------------------KGVPDFWLNAMKNNEILAEEI 228
Query: 153 QERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNPFFKNSVLTKTYHMVDE-DEPILEKA 211
E DE ALKYLKDIKW RIDDPKGFK +FFF TNPFFKN VLTKTYHM+DE DEPILEKA
Sbjct: 229 HESDEEALKYLKDIKWCRIDDPKGFKFEFFFYTNPFFKNQVLTKTYHMIDEDDEPILEKA 288
Query: 212 IGTEIEWYPXXXXXXXXXXXXXXXXXXXXXXXTKTEVCESFFNFFSPPQVPXXXXXXXXX 271
IGTEIEW+P TKTE CESFFNFFSPPQVP
Sbjct: 289 IGTEIEWHP---GYCLTQEVLTKESSESTKPITKTEECESFFNFFSPPQVPDDDAKIDEN 345
Query: 272 XXXXLQGQMEHDYDIGTTIRDKIIPHAVSWFTGEAVQ 308
LQ QME DYDI +T+RDKIIPHAVSWFT EAVQ
Sbjct: 346 TAEELQNQMERDYDIASTLRDKIIPHAVSWFTREAVQ 382
>Os01g0711800 Nucleosome assembly protein (NAP) family protein
Length = 297
Score = 323 bits (827), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 171/277 (61%), Positives = 189/277 (68%), Gaps = 15/277 (5%)
Query: 33 VNALKDKLQSLAGQHTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQK 92
V LK+KLQ+LA QH DVLE+L+P VRKRV+ L EIQ QHDE+E KF EE+AALEA YQK
Sbjct: 11 VETLKNKLQALAEQHVDVLESLAPVVRKRVDVLIEIQSQHDELEAKFLEEKAALEANYQK 70
Query: 93 LYEPLYTKRYNIXXXXXXXXXXXXXPASENAAEGKDADAKGVPDFWLTAMKTNEVLSEEI 152
LY PLY+KR I E ++ + KGVPDFWL AMK NE+L+EEI
Sbjct: 71 LYGPLYSKRSEIVSGVLE-----------VEGETEEREEKGVPDFWLKAMKNNEILAEEI 119
Query: 153 QERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNPFFKNSVLTKTYHMVDE-DEPILEKA 211
E DE ALKYLKDIKW RIDDPKGFK +FFFDTNPFFKN VLTKTYHM+DE DEPILEKA
Sbjct: 120 HESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTNPFFKNQVLTKTYHMIDEDDEPILEKA 179
Query: 212 IGTEIEWYPXXXXXXXXXXXXXXXXXXXXXXXTKTEVCESFFNFFSPPQVPXXXXXXXXX 271
IGTEIEW+P TKTE ESFFNFFSPPQVP
Sbjct: 180 IGTEIEWHP---GNCLTQEVLTKESSESTKPITKTEEYESFFNFFSPPQVPEDDAKIDEN 236
Query: 272 XXXXLQGQMEHDYDIGTTIRDKIIPHAVSWFTGEAVQ 308
LQ QME DYDI +T+RDKIIPH VSWFTGEAVQ
Sbjct: 237 TAEELQNQMERDYDIASTLRDKIIPHVVSWFTGEAVQ 273
>Os05g0235600
Length = 186
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 39/65 (60%), Gaps = 9/65 (13%)
Query: 244 TKTEVCESFFNFFSPPQVPXXXXXXXXXXXXXLQGQMEHDYDIGTTIRDKIIPHAVSWFT 303
TKTE CESFFNFFSPPQVP + +T+RDKIIPHAVSWFT
Sbjct: 105 TKTEECESFFNFFSPPQVPDDDAKNDEYTLAHVA---------RSTLRDKIIPHAVSWFT 155
Query: 304 GEAVQ 308
EAVQ
Sbjct: 156 REAVQ 160
>Os04g0459700 Nucleosome assembly protein (NAP) family protein
Length = 259
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 30/168 (17%)
Query: 52 EALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRYNIXXXXXXX 111
E + + + +E L+EIQ + +++ + ++ LE KY ++ P+Y +R I
Sbjct: 19 EPVDAALLQSIEKLQEIQDEIEKVNEEACDKVLELEQKYNEVRRPVYVRRNKI------- 71
Query: 112 XXXXXXPASENAAEGKDADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARI 171
K +PDFWLTA ++ +L E + E D+ K+L+ I
Sbjct: 72 -------------------IKQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDVDDS 112
Query: 172 DDPK-GFKLDFFFDTNPFFKNSVLTKTYHMVDEDEPILEKAIGTEIEW 218
+D K G+ + F NP+F+++ LTKTY D DE + KA T I W
Sbjct: 113 EDIKSGYSITLTFSPNPYFEDTKLTKTYSFSD-DEAVKVKA--TSIRW 157
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,989,892
Number of extensions: 259862
Number of successful extensions: 574
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 6
Length of query: 378
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 275
Effective length of database: 11,657,759
Effective search space: 3205883725
Effective search space used: 3205883725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)