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Os04g0459700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleosome assembly protein (NAP) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0279) R2 : 0.621
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.4 (0.088) R2dE : 0.618 R2E : 0.62
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0769 (0.0587) R2dN8 : 0.00145 R2N8 : 0.00279
σ : 0.524
deviance : 126.42
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 8.897
memory length : 197
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.93
open length of G : 18.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.28 0.48 10.6 0.622 1.09 1.39 1.18 -0.401 0.214 17.7 9.903 10 9.03 19.9
104.43 0.476 10.6 0.647 1.1 1.38 1.03 -- 0.222 17.8 9.592 11 9.02 19.9
106.62 0.481 10.6 0.667 1.11 1.37 -- 0.485 0.228 17.8 9.865 13 9.07 19.8
106.89 0.482 10.6 0.644 1.1 1.39 -- -- 0.216 17.8 9.759 13 9 19.9
123.16 0.517 10.6 0.787 -- 2.26 -- 1.2 0.233 -- 7.138 82 8.95 18.6
140.09 0.555 10.6 0.844 1.82 -- 1.12 -- 0.24 17.5 -- -- -- --
143.17 0.56 10.6 0.84 1.83 -- -- -- 0.245 17.5 -- -- -- --
119.06 0.508 10.6 0.528 -- 2.3 -- -- 0.157 -- 7.117 187 8.1 18.2
117.49 0.505 10.6 -- 1.06 1.43 -- -- 0.155 17.9 10.25 15 9.03 19.8
316.45 0.831 10.6 0.78 -- -- -- -- 0.201 -- -- -- -- --
161.78 0.595 10.6 -- 1.81 -- -- -- 0.151 17.5 -- -- -- --
126.42 0.524 10.6 -- -- 2.4 -- -- 0.0769 -- 8.897 197 7.93 18.4
332.51 0.851 10.6 -- -- -- -- -- 0.114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 105.44 temperature 10.0 10 > th dose dependent rect. 9 20
34 113.20 temperature 15.0 10 > th dose dependent rect. 9 14
41 113.70 temperature 15.0 10 > th dose dependent rect. 9 6
66 115.12 wind 9.0 10 < th dose independent rect. 9 20
70 115.30 temperature 15.0 270 > th dose dependent rect. 9 1
74 115.54 radiation 30.0 90 < th dose independent rect. 4 5
77 115.69 wind 5.0 10 < th dose independent rect. 5 4
78 115.73 wind 5.0 270 < th dose independent rect. 4 2
83 115.86 radiation 1.0 30 > th dose independent rect. 5 4
97 115.93 atmosphere 1000.0 10 > th dose dependent rect. 5 4
106 116.12 radiation 40.0 10 < th dose independent rect. 5 15
107 116.17 precipitation 0.1 10 < th dose independent rect. 5 4
108 116.17 precipitation 0.1 10 < th dose dependent rect. 5 4
109 116.19 radiation 40.0 270 < th dose dependent rect. 3 14
112 116.27 temperature 10.0 1440 > th dose independent rect. 5 5
115 116.27 atmosphere 995.0 1440 > th dose independent rect. 5 5
116 116.27 atmosphere 1015.0 1440 < th dose independent rect. 5 5
117 116.27 temperature 10.0 1440 > th dose independent rect. 10 19
122 116.28 wind 9.0 270 < th dose independent rect. 6 22
126 116.30 temperature 10.0 10 > th dose independent rect. 5 4
128 116.30 temperature 30.0 10 < th dose independent rect. 5 4
129 116.30 humidity 50.0 10 > th dose independent rect. 5 4
131 116.30 atmosphere 995.0 10 > th dose independent rect. 5 4
132 116.30 atmosphere 1015.0 10 < th dose independent rect. 5 4
133 116.30 temperature 10.0 10 > th dose independent rect. 9 20
135 116.31 temperature 15.0 10 > th dose dependent rect. 9 9
151 116.52 temperature 30.0 90 < th dose dependent rect. 4 15
157 116.64 precipitation 0.1 10 < th dose independent rect. 9 20
158 116.64 precipitation 0.1 10 < th dose dependent rect. 9 20
163 116.73 temperature 30.0 90 < th dose independent rect. 4 5
171 116.80 temperature 15.0 90 > th dose independent rect. 9 19
177 116.84 radiation 30.0 90 < th dose independent rect. 4 7
198 116.97 temperature 10.0 10 > th dose dependent rect. 5 4
213 117.14 wind 9.0 10 < th dose dependent rect. 5 4
219 117.22 radiation 40.0 10 < th dose independent rect. 5 4
221 117.23 radiation 30.0 270 < th dose dependent rect. 3 6
222 117.24 atmosphere 995.0 10 > th dose independent rect. 9 20
225 117.30 atmosphere 1000.0 270 > th dose dependent rect. 4 2
227 117.36 precipitation 0.1 270 < th dose independent rect. 4 2
229 117.36 precipitation 0.1 270 < th dose dependent rect. 4 2
234 117.41 atmosphere 1010.0 270 < th dose independent rect. 4 2
236 117.42 humidity 90.0 30 < th dose independent rect. 3 6
241 117.45 radiation 30.0 270 < th dose dependent rect. 3 8
242 117.47 temperature 30.0 10 < th dose dependent rect. 5 15
247 117.49 precipitation 0.1 270 < th dose independent rect. 6 22
248 117.49 precipitation 0.1 270 < th dose dependent rect. 6 22
251 117.51 humidity 90.0 10 < th dose independent rect. 5 4
281 117.61 temperature 10.0 270 > th dose independent rect. 4 2
283 117.61 temperature 30.0 270 < th dose independent rect. 4 2
284 117.61 humidity 50.0 270 > th dose independent rect. 4 2
287 117.61 atmosphere 995.0 270 > th dose independent rect. 4 2
289 117.61 radiation 20.0 270 < th dose independent rect. 4 2
292 117.61 temperature 10.0 270 > th dose independent rect. 6 22
295 117.61 radiation 30.0 270 < th dose dependent rect. 3 11
296 117.62 humidity 90.0 10 < th dose dependent rect. 9 6
306 117.69 radiation 40.0 270 < th dose dependent rect. 4 2
312 117.74 radiation 40.0 270 < th dose independent rect. 3 14
338 117.87 radiation 40.0 90 < th dose independent rect. 5 14
368 118.02 wind 9.0 270 < th dose dependent rect. 4 2
379 118.06 humidity 70.0 90 > th dose independent rect. 4 13
382 118.07 temperature 30.0 90 < th dose independent rect. 4 15
388 118.13 humidity 70.0 90 > th dose independent rect. 4 7
396 118.18 humidity 80.0 10 < th dose independent rect. 9 6
445 118.34 radiation 1.0 90 > th dose dependent rect. 8 10
481 118.45 humidity 60.0 90 > th dose dependent rect. 5 14
488 118.47 radiation 1.0 270 > th dose dependent rect. 9 1
495 118.54 wind 1.0 270 > th dose independent rect. 3 4
529 118.64 wind 1.0 30 > th dose independent rect. 5 4
539 118.71 humidity 70.0 90 > th dose independent rect. 4 11
617 119.03 radiation 1.0 270 > th dose dependent rect. 8 3
641 119.18 atmosphere 1005.0 10 > th dose independent rect. 5 4
642 119.18 humidity 90.0 270 < th dose dependent rect. 9 1
644 119.19 temperature 30.0 90 < th dose dependent rect. 4 19
645 119.19 wind 9.0 270 < th dose dependent rect. 7 20
658 119.26 radiation 1.0 90 > th dose dependent rect. 8 7
671 119.33 radiation 40.0 270 > th dose independent rect. 9 1
682 119.38 wind 9.0 90 < th dose dependent rect. 9 19
684 119.39 radiation 1.0 10 > th dose dependent rect. 9 10
701 119.41 radiation 40.0 90 < th dose dependent rect. 5 14
704 119.43 atmosphere 1015.0 10 < th dose independent rect. 9 20
708 119.45 temperature 10.0 270 > th dose dependent rect. 4 2
720 119.53 radiation 20.0 270 < th dose independent rect. 3 14
730 119.60 radiation 40.0 10 < th dose independent rect. 5 19
731 119.60 radiation 40.0 270 < th dose independent rect. 10 22
737 119.63 humidity 50.0 10 > th dose dependent rect. 5 15
755 119.67 temperature 30.0 10 < th dose dependent rect. 5 13
768 119.72 humidity 60.0 10 > th dose independent rect. 5 15
770 119.73 temperature 30.0 270 < th dose dependent rect. 4 1
785 119.78 atmosphere 1005.0 270 > th dose independent rect. 4 2
813 119.85 humidity 50.0 270 > th dose dependent rect. 4 2
914 120.14 radiation 30.0 270 > th dose dependent rect. 8 2
916 120.14 temperature 10.0 270 > th dose dependent rect. 22 14