Os06g0149400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chitinase A.
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Os06g0149400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chitinase A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.51 | 0.264 | 12.8 | 0.633 | 1.18 | -0.465 | 0.26 | 0.359 | 0.284 | 17.8 | 19.87 | 4137 | -- | -- |
| 31.67 | 0.262 | 12.8 | 0.691 | 1.18 | -0.536 | 0.286 | -- | 0.296 | 17.8 | 19.87 | 4120 | -- | -- |
| 31.67 | 0.262 | 12.8 | 0.631 | 1.18 | -0.465 | -- | 0.372 | 0.283 | 17.8 | 19.8 | 4136 | -- | -- |
| 31.82 | 0.263 | 12.8 | 0.686 | 1.19 | -0.552 | -- | -- | 0.303 | 17.8 | 19.7 | 4127 | -- | -- |
| 102.34 | 0.471 | 12.8 | 0.585 | -- | -0.49 | -- | 0.264 | 0.261 | -- | 19.3 | 6310 | -- | -- |
| 36.63 | 0.284 | 12.8 | 1.01 | 1.16 | -- | 0.335 | -- | 0.437 | 17.8 | -- | -- | -- | -- |
| 36.9 | 0.284 | 12.8 | 1.01 | 1.17 | -- | -- | -- | 0.438 | 17.8 | -- | -- | -- | -- |
| 102.32 | 0.471 | 12.8 | 0.59 | -- | -0.566 | -- | -- | 0.268 | -- | 19.4 | 6331 | -- | -- |
| 35.26 | 0.277 | 12.9 | -- | 1.17 | -0.879 | -- | -- | 0.134 | 17.7 | 18.2 | 43120 | -- | -- |
| 107.34 | 0.484 | 12.8 | 0.972 | -- | -- | -- | -- | 0.411 | -- | -- | -- | -- | -- |
| 63.68 | 0.373 | 12.8 | -- | 1.15 | -- | -- | -- | 0.326 | 17.8 | -- | -- | -- | -- |
| 105.94 | 0.479 | 12.8 | -- | -- | -0.864 | -- | -- | 0.135 | -- | 16.74 | 47520 | -- | -- |
| 132.27 | 0.537 | 12.8 | -- | -- | -- | -- | -- | 0.303 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.56 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 2 | 28.58 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 5 | 28.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 6 | 28.72 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 10 | 28.81 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 11 | 28.82 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 30 | 29.15 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 35 | 29.22 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 41 | 29.27 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 45 | 29.29 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 47 | 29.31 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 69 | 29.48 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 106 | 29.72 | temperature | 30.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 120 | 29.79 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 141 | 29.89 | temperature | 10.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 157 | 29.95 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 178 | 30.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 186 | 30.07 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 189 | 30.08 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 198 | 30.11 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 206 | 30.14 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 216 | 30.18 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 235 | 30.26 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 15 |
| 240 | 30.27 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 241 | 30.27 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 263 | 30.32 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 273 | 30.35 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 279 | 30.36 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 376 | 30.52 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 380 | 30.52 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 399 | 30.56 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 421 | 30.61 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 423 | 30.61 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 425 | 30.61 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 427 | 30.62 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 450 | 30.65 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 473 | 30.69 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 505 | 30.76 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 508 | 30.76 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 527 | 30.81 | temperature | 25.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 531 | 30.81 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 532 | 30.81 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 556 | 30.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 558 | 30.84 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 559 | 30.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 562 | 30.84 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 563 | 30.84 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 564 | 30.84 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 567 | 30.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 577 | 30.86 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 579 | 30.87 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 631 | 30.93 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 633 | 30.93 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 670 | 30.97 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 671 | 30.97 | wind | 7.0 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 680 | 30.98 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 4 | 4 |
| 694 | 31.00 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 695 | 31.00 | temperature | 25.0 | 10 | > th | dose independent | rect. | 9 | 3 |
| 697 | 31.00 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 5 |
| 699 | 31.00 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 15 | 12 |
| 705 | 31.00 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 715 | 31.01 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 719 | 31.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 726 | 31.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 753 | 31.04 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 14 | 13 |
| 786 | 31.07 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 800 | 31.08 | temperature | 20.0 | 4320 | < th | dose independent | sin | 16 | NA |
| 822 | 31.09 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 860 | 31.12 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 870 | 31.13 | temperature | 20.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 872 | 31.13 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 913 | 31.16 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 974 | 31.20 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 986 | 31.21 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 988 | 31.21 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 989 | 31.21 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 991 | 31.21 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 992 | 31.21 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 5 |