BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0149400 Os06g0149400|AK071177
(378 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G19480.1 | chr2:8438601-8441040 FORWARD LENGTH=380 363 e-101
AT5G56950.1 | chr5:23032618-23035299 FORWARD LENGTH=375 345 2e-95
AT4G26110.1 | chr4:13232712-13235502 FORWARD LENGTH=373 342 1e-94
AT3G13782.1 | chr3:4526660-4528398 FORWARD LENGTH=318 248 3e-66
AT1G18800.1 | chr1:6481466-6483463 REVERSE LENGTH=257 68 9e-12
AT1G74560.3 | chr1:28017763-28019900 REVERSE LENGTH=265 63 2e-10
>AT2G19480.1 | chr2:8438601-8441040 FORWARD LENGTH=380
Length = 379
Score = 363 bits (933), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/275 (65%), Positives = 205/275 (74%), Gaps = 1/275 (0%)
Query: 33 VNALKDKLQSLAGQHTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQK 92
VNALK+KLQ+LAGQH+DVLE L+P VRKRVE+LREIQ Q+DE+E KFFEERAALEAKYQK
Sbjct: 26 VNALKNKLQNLAGQHSDVLENLTPPVRKRVEFLREIQNQYDEMEAKFFEERAALEAKYQK 85
Query: 93 LYEPLYTKRYNIXXXXXXXXXXXXXPASENAAEGKDADAKGVPDFWLTAMKTNEVLSEEI 152
LY+PLYTKRY I SE E K A+ KGVPDFWL A+K NE+ +EEI
Sbjct: 86 LYQPLYTKRYEIVNGVVEVEGAAEEVKSEQG-EDKSAEEKGVPDFWLIALKNNEITAEEI 144
Query: 153 QERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNPFFKNSVLTKTYHMVDEDEPILEKAI 212
ERDE ALKYLKDIKW+R+++PKGFKL+FFFD NP+FKN+VLTKTYHM+DEDEPILEKA+
Sbjct: 145 TERDEGALKYLKDIKWSRVEEPKGFKLEFFFDQNPYFKNTVLTKTYHMIDEDEPILEKAL 204
Query: 213 GTEIEWYPXXXXXXXXXXXXXXXXXXXXXXXTKTEVCESFFNFFSPPQVPXXXXXXXXXX 272
GTEIEWYP TKTE CESFFNFFSPPQVP
Sbjct: 205 GTEIEWYPGKCLTQKILKKKPKKGSKNTKPITKTEDCESFFNFFSPPQVPDDDEDLDDDM 264
Query: 273 XXXLQGQMEHDYDIGTTIRDKIIPHAVSWFTGEAV 307
LQGQMEHDYDIG+TI++KII HAVSWFTGEAV
Sbjct: 265 ADELQGQMEHDYDIGSTIKEKIISHAVSWFTGEAV 299
>AT5G56950.1 | chr5:23032618-23035299 FORWARD LENGTH=375
Length = 374
Score = 345 bits (886), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 171/277 (61%), Positives = 200/277 (72%), Gaps = 1/277 (0%)
Query: 33 VNALKDKLQSLAGQHTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQK 92
VNALK+KLQ+LAGQH+DVLE L+P +R+RVE LREIQG+HDEIE KF EERAALEAKYQK
Sbjct: 26 VNALKNKLQNLAGQHSDVLENLTPKIRRRVEVLREIQGKHDEIETKFREERAALEAKYQK 85
Query: 93 LYEPLYTKRYNIXXXXXXXXXXXXXPASENAAEGKDADAKGVPDFWLTAMKTNEVLSEEI 152
LY+PLY KRY I A + + K A+ KGVP FWLTA+K N+V+SEEI
Sbjct: 86 LYQPLYNKRYEIVNGATEVEGAPED-AKMDQGDEKTAEEKGVPSFWLTALKNNDVISEEI 144
Query: 153 QERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNPFFKNSVLTKTYHMVDEDEPILEKAI 212
ERDE AL YLKDIKW +I++PKGFKL+FFFD NP+FKN++LTK YHM+DEDEP+LEKAI
Sbjct: 145 TERDEGALIYLKDIKWCKIEEPKGFKLEFFFDQNPYFKNTLLTKAYHMIDEDEPLLEKAI 204
Query: 213 GTEIEWYPXXXXXXXXXXXXXXXXXXXXXXXTKTEVCESFFNFFSPPQVPXXXXXXXXXX 272
GTEI+WYP TKTE CESFFNFF+PPQVP
Sbjct: 205 GTEIDWYPGKCLTQKILKKKPKKGAKNAKPITKTEDCESFFNFFNPPQVPDDDEDIDEER 264
Query: 273 XXXLQGQMEHDYDIGTTIRDKIIPHAVSWFTGEAVQA 309
LQ ME DYDIG+TIR+KIIPHAVSWFTGEA++
Sbjct: 265 AEELQNLMEQDYDIGSTIREKIIPHAVSWFTGEAIEG 301
>AT4G26110.1 | chr4:13232712-13235502 FORWARD LENGTH=373
Length = 372
Score = 342 bits (878), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 168/277 (60%), Positives = 198/277 (71%)
Query: 33 VNALKDKLQSLAGQHTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQK 92
VNALK+KLQ+LAGQ +DVLE L+PNVRKRV+ LR+IQ QHDE+E KF EERA LEAKYQ
Sbjct: 26 VNALKNKLQNLAGQRSDVLENLTPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQT 85
Query: 93 LYEPLYTKRYNIXXXXXXXXXXXXXPASENAAEGKDADAKGVPDFWLTAMKTNEVLSEEI 152
LY+PLY KRY I + E K A+ KGVP FWLTA+K N+V+SEE+
Sbjct: 86 LYQPLYVKRYEIVNGTTEVELAPEDDTKVDQGEEKTAEEKGVPSFWLTALKNNDVISEEV 145
Query: 153 QERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNPFFKNSVLTKTYHMVDEDEPILEKAI 212
ERDE ALKYLKDIKW +I++PKGFKL+FFFDTNP+FKN+VLTK+YHM+DEDEP+LEKA+
Sbjct: 146 TERDEGALKYLKDIKWCKIEEPKGFKLEFFFDTNPYFKNTVLTKSYHMIDEDEPLLEKAM 205
Query: 213 GTEIEWYPXXXXXXXXXXXXXXXXXXXXXXXTKTEVCESFFNFFSPPQVPXXXXXXXXXX 272
GTEI+WYP TK E CESFFNFFSPP+VP
Sbjct: 206 GTEIDWYPGKCLTQKILKKKPKKGSKNTKPITKLEDCESFFNFFSPPEVPDEDEDIDEER 265
Query: 273 XXXLQGQMEHDYDIGTTIRDKIIPHAVSWFTGEAVQA 309
LQ ME DYDIG+TIR+KIIP AVSWFTGEA++A
Sbjct: 266 AEDLQNLMEQDYDIGSTIREKIIPRAVSWFTGEAMEA 302
>AT3G13782.1 | chr3:4526660-4528398 FORWARD LENGTH=318
Length = 317
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 133/278 (47%), Positives = 170/278 (61%), Gaps = 25/278 (8%)
Query: 39 KLQSLAGQHTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLY 98
+L++L + ++ LSP V KRV +L++IQ HDE+E KF E++ALEA Y LY+PL+
Sbjct: 37 ELKNLTLKRPFDVKKLSPKVTKRVLFLKDIQVTHDELEEKFLAEKSALEATYDNLYKPLF 96
Query: 99 TKRYNIXXXXXXXXXXXXXPASENAAEGKDADAKGVPDFWLTAMKTNEVLSEEIQERDEP 158
KRY I N +A+ +GVP+FWL AMKTNE+L+ EI ERDE
Sbjct: 97 AKRYEIV----------------NGVVEAEAEKEGVPNFWLIAMKTNEMLANEITERDEA 140
Query: 159 ALKYLKDIKWARIDD-PKGFKLDFFFDTNPFFKNSVLTKTYHMVDEDEPILEKAIGTEIE 217
ALKYLKDI+ R++D + FKL+F FD+N +FKNSVL+KTYH+ DED P+LEK IGT+IE
Sbjct: 141 ALKYLKDIRSCRVEDTSRNFKLEFLFDSNLYFKNSVLSKTYHVNDEDGPVLEKVIGTDIE 200
Query: 218 WYPXXXXXXXXXXXXXXXXXXXXXX---XTKTEVCESFFNFFSPPQVP-----XXXXXXX 269
W+P TKTE CESFFNFF PP++P
Sbjct: 201 WFPGKCLTHKVVVKKKTKKGPKKVNNIPMTKTENCESFFNFFKPPEIPEIDEVDDYDDFD 260
Query: 270 XXXXXXLQGQMEHDYDIGTTIRDKIIPHAVSWFTGEAV 307
LQ M+ DYDI TIRDK+IPHAVSWFTGEA+
Sbjct: 261 TIMTEELQNLMDQDYDIAVTIRDKLIPHAVSWFTGEAL 298
>AT1G18800.1 | chr1:6481466-6483463 REVERSE LENGTH=257
Length = 256
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 51 LEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRYNIXXXXXX 110
+E + + +E L+EIQ ++I K +E +E KY + +P+Y KR I
Sbjct: 16 VEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRKPVYDKRNEI------ 69
Query: 111 XXXXXXXPASENAAEGKDADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWAR 170
K +PDFWLTA ++ L E + E D+ KYL +
Sbjct: 70 --------------------IKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVED 109
Query: 171 IDDPK-GFKLDFFFDTNPFFKNSVLTKTYHMVDEDEPILEKAIGTEIEW 218
D K G+ + F F+ NPFF++ LTKT+ ++E K T I+W
Sbjct: 110 AKDVKSGYSITFSFNPNPFFEDGKLTKTFTFLEEGTT---KITATPIKW 155
>AT1G74560.3 | chr1:28017763-28019900 REVERSE LENGTH=265
Length = 264
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 30/158 (18%)
Query: 62 VEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRYNIXXXXXXXXXXXXXPASE 121
+E L+EIQ ++I K +E +E KY + +P+Y KR +
Sbjct: 31 IEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRKPVYDKRNEV----------------- 73
Query: 122 NAAEGKDADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPK-GFKLD 180
+ +P FW+TA ++ L + + E D+ KYL ++ D K G+ +
Sbjct: 74 ---------IQSIPGFWMTAFLSHPALGDLLTEEDQKIFKYLNSLEVEDAKDVKSGYSIT 124
Query: 181 FFFDTNPFFKNSVLTKTYHMVDEDEPILEKAIGTEIEW 218
F F +NPFF+++ LTKT+ ++E K T I+W
Sbjct: 125 FHFTSNPFFEDAKLTKTFTFLEEGTT---KITATPIKW 159
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,321,809
Number of extensions: 185159
Number of successful extensions: 517
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 6
Length of query: 378
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 278
Effective length of database: 8,364,969
Effective search space: 2325461382
Effective search space used: 2325461382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)