BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0146800 Os06g0146800|AK121050
         (115 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0146800  Conserved hypothetical protein                      124   2e-29
Os06g0147000  Conserved hypothetical protein                       76   6e-15

>Os06g0146800 Conserved hypothetical protein
          Length = 115

 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/115 (60%), Positives = 70/115 (60%)

Query: 1   MDMDRHGALTKLGFGALTFNSALAIYRSRGDPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDMDRHGALTKLGFGALTFNSALAIYRSRGDP                            
Sbjct: 1   MDMDRHGALTKLGFGALTFNSALAIYRSRGDPATVAFVAGAYAAIVLLFYFLLRFERRRD 60

Query: 61  XXXXXXXXXXXXXXXXXAMFAARVAPLMPPLVAFVVWVMAAGTSVAGFWAFFLNL 115
                            AMFAARVAPLMPPLVAFVVWVMAAGTSVAGFWAFFLNL
Sbjct: 61  DRGRTKVVVWVLTTLLTAMFAARVAPLMPPLVAFVVWVMAAGTSVAGFWAFFLNL 115



>Os06g0147000 Conserved hypothetical protein
          Length = 118

 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 56/113 (49%), Gaps = 2/113 (1%)

Query: 4   DRHGAL-TKLGFGALTFNSALAIYRSRGD-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 61
           DRH +L TK+GFGALT NS  AIYRS+GD                               
Sbjct: 5   DRHSSLLTKVGFGALTCNSIFAIYRSQGDLASVAFVVAAYAALLLLFYFLGKFERARPEE 64

Query: 62  XXXXXXXXXXXXXXXXAMFAARVAPLMPPLVAFVVWVMAAGTSVAGFWAFFLN 114
                           AMFA+RVAPLMPPLVA  VW+MAA T V GFWAFFL+
Sbjct: 65  RGKVKAAVWSLTTLLTAMFASRVAPLMPPLVAAGVWIMAAATVVGGFWAFFLH 117



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.140    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,234,573
Number of extensions: 36253
Number of successful extensions: 161
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 3
Length of query: 115
Length of database: 17,035,801
Length adjustment: 82
Effective length of query: 33
Effective length of database: 12,754,253
Effective search space: 420890349
Effective search space used: 420890349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 149 (62.0 bits)