BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0145800 Os06g0145800|J013110L14
         (190 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0145800  ssDNA-binding transcriptional regulator family...   259   1e-69
Os02g0158400  ssDNA-binding transcriptional regulator family...   109   1e-24

>Os06g0145800 ssDNA-binding transcriptional regulator family protein
          Length = 190

 Score =  259 bits (661), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/147 (87%), Positives = 128/147 (87%)

Query: 44  VSSVCPVASQRHSDYFXXXXXXXXXXXXXXXXXXXSPPAAQGGQQNGRVFSTYSIYKGKA 103
           VSSVCPVASQRHSDYF                   SPPAAQGGQQNGRVFSTYSIYKGKA
Sbjct: 44  VSSVCPVASQRHSDYFDPRAPPPPPPRDGYGGPAYSPPAAQGGQQNGRVFSTYSIYKGKA 103

Query: 104 AMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEMGSLLT 163
           AMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEMGSLLT
Sbjct: 104 AMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEMGSLLT 163

Query: 164 LGPTDSCEFFHDPFKGRRSVLLNISDC 190
           LGPTDSCEFFHDPFKGRRSVLLNISDC
Sbjct: 164 LGPTDSCEFFHDPFKGRRSVLLNISDC 190



>Os02g0158400 ssDNA-binding transcriptional regulator family protein
          Length = 228

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 69/88 (78%)

Query: 89  NGRVFSTYSIYKGKAAMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAPAVATRQYDWTRK 148
           +GR F++Y+++KGKAA+S+ P  P F  L+SG  +V K G V+L F PAV  R+YD+++K
Sbjct: 43  SGRKFASYTVFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKK 102

Query: 149 QVFSLSVWEMGSLLTLGPTDSCEFFHDP 176
           Q+F+LS  E+GSL++LGP +SCEFFHDP
Sbjct: 103 QLFALSPTEVGSLISLGPAESCEFFHDP 130



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,818,798
Number of extensions: 175917
Number of successful extensions: 234
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,075,471
Effective search space: 1147169745
Effective search space used: 1147169745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)