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Os06g0145800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ssDNA-binding transcriptional regulator family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0275) R2 : 0.85
β1 : 0.713 (0.101) R2dD : 0.0171 R2D : -0.000795
β2 : 4.22 (0.0869) R2dC : 1.15 R2C : 0.57
β3 : 2.37 (0.11) R2dE : 0.226 R2E : -0.349
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.386 (0.0593) R2dN8 : 0.0193 R2N8 : 0.0349
σ : 0.513
deviance : 121.45
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C
peak time of C : 18
E
wheather : temperature
threshold : 32.1
memory length : 235
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.2
open length of G : 7.55

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
116.58 0.507 10.7 0.669 4.22 2.48 -0.423 1.14 -0.39 18 31.64 248 21.1 7.37
119.03 0.508 10.7 0.707 4.24 2.44 -1.01 -- -0.38 18 32.04 238 21.2 7.5
116.79 0.503 10.7 0.666 4.25 2.48 -- 1.33 -0.392 18 31.75 238 21.2 7.54
121.45 0.513 10.7 0.713 4.22 2.37 -- -- -0.386 18 32.1 235 21.2 7.55
367.07 0.892 11 1.12 -- 2.53 -- 4.43 -1.16 -- 285.8 3491 12.5 4.01
162.2 0.597 10.8 0.552 3.36 -- -0.445 -- -0.598 19.3 -- -- -- --
162.73 0.597 10.8 0.562 3.36 -- -- -- -0.599 19.3 -- -- -- --
162.03 0.593 10.7 0.718 -- 3.24 -- -- -0.605 -- 335.5 3715 9.42 6.06
134.18 0.54 10.8 -- 4.17 2.23 -- -- -0.482 18.1 33.28 235 21.3 7.4
763.07 1.29 10.7 0.505 -- -- -- -- -0.655 -- -- -- -- --
171.04 0.612 10.8 -- 3.36 -- -- -- -0.662 19.3 -- -- -- --
172.54 0.612 10.7 -- -- 3.29 -- -- -0.654 -- 362.7 3688 9.53 6.55
769.79 1.3 10.7 -- -- -- -- -- -0.711 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.05 temperature 30 270 < th dose dependent rect. 21 7
2 119.87 temperature 30 90 < th dose dependent rect. 23 7
4 120.92 temperature 30 10 < th dose dependent rect. 23 7
6 121.35 temperature 10 270 > th dose dependent rect. 18 14
16 123.14 temperature 20 270 > th dose independent rect. 17 15
59 127.70 temperature 10 10 > th dose dependent sin 9 NA
82 128.80 temperature 20 30 > th dose independent sin 9 NA
102 129.26 radiation 40 270 < th dose independent rect. 4 17
116 129.59 radiation 40 270 < th dose independent rect. 3 19
126 129.99 temperature 20 30 > th dose independent rect. 15 21
127 130.04 radiation 40 90 < th dose independent rect. 6 17
170 131.15 temperature 30 10 < th dose dependent sin 9 NA
179 131.44 temperature 20 90 > th dose independent rect. 5 18
189 131.61 temperature 20 90 > th dose independent rect. 4 21
198 131.77 temperature 20 270 > th dose independent rect. 15 9
200 131.83 temperature 15 10 > th dose dependent rect. 19 14
240 132.48 temperature 20 10 < th dose independent rect. 23 20
274 132.92 temperature 20 90 > th dose independent rect. 4 23
287 133.12 radiation 40 270 < th dose independent rect. 3 8
299 133.28 temperature 20 10 < th dose independent rect. 23 17
344 133.70 temperature 20 10 < th dose independent rect. 23 15
366 133.89 temperature 20 10 < th dose independent rect. 23 8
386 134.17 temperature 20 10 < th dose independent rect. 23 13
388 134.20 temperature 20 30 < th dose independent sin 8 NA
448 134.68 atmosphere 1010 270 < th dose independent rect. 15 8
475 134.93 temperature 20 30 > th dose independent no NA NA
515 135.32 temperature 20 30 < th dose independent rect. 11 20
533 135.39 temperature 20 30 > th dose independent rect. 17 23
552 135.50 temperature 25 10 < th dose dependent rect. 18 13
606 135.83 wind 1 90 > th dose independent rect. 23 7
623 135.90 temperature 15 720 > th dose dependent rect. 19 5
628 135.92 radiation 10 90 < th dose dependent rect. 23 11
640 135.98 temperature 20 30 < th dose independent rect. 13 23
641 136.00 temperature 20 30 < th dose independent no NA NA
642 136.00 temperature 20 30 < th dose independent rect. 15 23
643 136.00 temperature 20 30 < th dose independent rect. 17 23
656 136.05 temperature 20 30 < th dose independent rect. 1 23
661 136.08 temperature 15 720 > th dose dependent rect. 20 3
668 136.14 temperature 20 30 < th dose independent rect. 5 23
673 136.16 temperature 20 30 < th dose independent rect. 3 23
676 136.17 wind 7 270 < th dose independent rect. 10 17
766 136.62 radiation 40 270 < th dose independent sin 6 NA
785 136.70 temperature 20 10 > th dose independent rect. 5 7
797 136.74 radiation 40 270 < th dose dependent rect. 4 8
811 136.82 atmosphere 1015 270 < th dose independent rect. 4 17
828 136.91 temperature 25 10 < th dose dependent rect. 16 15
829 136.92 radiation 1 90 < th dose independent rect. 23 8
862 137.03 temperature 20 720 > th dose independent rect. 19 5
863 137.03 temperature 30 270 < th dose independent rect. 3 8
882 137.10 radiation 40 270 < th dose dependent rect. 4 17
900 137.16 wind 7 270 < th dose independent rect. 9 8
919 137.23 radiation 10 90 < th dose dependent rect. 23 14
950 137.34 temperature 25 10 < th dose dependent rect. 14 17