BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0145800 Os06g0145800|J013110L14
(190 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02740.1 | chr2:769389-770993 FORWARD LENGTH=269 142 1e-34
AT1G14410.1 | chr1:4929352-4930810 REVERSE LENGTH=264 140 5e-34
AT1G71260.1 | chr1:26861849-26863391 REVERSE LENGTH=239 107 4e-24
>AT2G02740.1 | chr2:769389-770993 FORWARD LENGTH=269
Length = 268
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 80/92 (86%)
Query: 91 RVFSTYSIYKGKAAMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAPAVATRQYDWTRKQV 150
R + +SIYKGKAA++++PR P+FV L+SGA+K+ KEGF+LLQFAPA RQYDW+RKQV
Sbjct: 84 RFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQV 143
Query: 151 FSLSVWEMGSLLTLGPTDSCEFFHDPFKGRRS 182
FSLSV E+G+L++LGP +SCEFFHDPFKG+ S
Sbjct: 144 FSLSVTEIGNLVSLGPRESCEFFHDPFKGKGS 175
>AT1G14410.1 | chr1:4929352-4930810 REVERSE LENGTH=264
Length = 263
Score = 140 bits (352), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 84/102 (82%), Gaps = 2/102 (1%)
Query: 79 SPPAAQGGQQNGRVFSTYSIYKGKAAMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAPAV 138
SP A+G R + +SIYKGKAA+++DPR P+FV LDSGA+K+ K+GF+LLQFAP+
Sbjct: 70 SPSPAEG--LPARFYVGHSIYKGKAALTVDPRAPEFVALDSGAFKLSKDGFLLLQFAPSA 127
Query: 139 ATRQYDWTRKQVFSLSVWEMGSLLTLGPTDSCEFFHDPFKGR 180
RQYDW++KQVFSLSV E+G+L++LGP +SCEFFHDPFKG+
Sbjct: 128 GVRQYDWSKKQVFSLSVTEIGTLVSLGPRESCEFFHDPFKGK 169
>AT1G71260.1 | chr1:26861849-26863391 REVERSE LENGTH=239
Length = 238
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 68/96 (70%)
Query: 81 PAAQGGQQNGRVFSTYSIYKGKAAMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAPAVAT 140
P + +GR+F+ YSI+KGKAA+S++P P F +DSG ++ + G +++ F PA+
Sbjct: 43 PGKDAAKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGE 102
Query: 141 RQYDWTRKQVFSLSVWEMGSLLTLGPTDSCEFFHDP 176
R+YDW +KQ F+LS E+GSL+++G DS EFFHDP
Sbjct: 103 RKYDWEKKQKFALSPTEVGSLISMGSKDSSEFFHDP 138
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,905,544
Number of extensions: 103559
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 3
Length of query: 190
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 97
Effective length of database: 8,556,881
Effective search space: 830017457
Effective search space used: 830017457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)