Os02g0158400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ssDNA-binding transcriptional regulator family protein.
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Os02g0158400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ssDNA-binding transcriptional regulator family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.3 | 0.259 | 9.15 | 0.397 | 0.512 | 1.1 | 0.109 | -0.0222 | -0.0575 | 15.9 | 20.6 | 3844 | -- | -- |
| 30.3 | 0.256 | 9.15 | 0.401 | 0.512 | 1.11 | 0.111 | -- | -0.0565 | 15.9 | 20.56 | 3847 | -- | -- |
| 30.34 | 0.257 | 9.15 | 0.396 | 0.513 | 1.1 | -- | -0.0346 | -0.0572 | 15.9 | 20.6 | 3847 | -- | -- |
| 30.34 | 0.257 | 9.15 | 0.402 | 0.513 | 1.11 | -- | -- | -0.0563 | 15.9 | 20.56 | 3847 | -- | -- |
| 43.66 | 0.308 | 9.15 | 0.424 | -- | 1.06 | -- | -0.0185 | -0.0515 | -- | 20.6 | 3378 | -- | -- |
| 54.48 | 0.346 | 9.08 | 1.07 | 0.473 | -- | 0.166 | -- | 0.263 | 16.2 | -- | -- | -- | -- |
| 54.56 | 0.346 | 9.08 | 1.07 | 0.475 | -- | -- | -- | 0.264 | 16.2 | -- | -- | -- | -- |
| 43.66 | 0.308 | 9.15 | 0.427 | -- | 1.06 | -- | -- | -0.0509 | -- | 20.6 | 3382 | -- | -- |
| 33.24 | 0.269 | 9.17 | -- | 0.529 | 1.33 | -- | -- | -0.151 | 15.6 | 20.51 | 3930 | -- | -- |
| 66.73 | 0.382 | 9.08 | 1.05 | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
| 84.67 | 0.43 | 9.11 | -- | 0.454 | -- | -- | -- | 0.145 | 16.3 | -- | -- | -- | -- |
| 46.36 | 0.317 | 9.16 | -- | -- | 1.18 | -- | -- | -0.126 | -- | 19.2 | 22131 | -- | -- |
| 95.81 | 0.457 | 9.1 | -- | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 2 | 26.91 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 4 | 26.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 18 | 27.15 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 52 | 27.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 14 |
| 183 | 29.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 10 |
| 218 | 29.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 250 | 29.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 296 | 29.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 328 | 29.72 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 415 | 29.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 458 | 29.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 774 | 30.40 | temperature | 25 | 4320 | < th | dose dependent | sin | 4 | NA |
| 809 | 30.43 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |