BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0158400 Os02g0158400|AK061569
         (228 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71260.1  | chr1:26861849-26863391 REVERSE LENGTH=239          222   1e-58
AT1G14410.1  | chr1:4929352-4930810 REVERSE LENGTH=264            176   9e-45
AT2G02740.1  | chr2:769389-770993 FORWARD LENGTH=269              176   1e-44

>AT1G71260.1 | chr1:26861849-26863391 REVERSE LENGTH=239
          Length = 238

 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/189 (56%), Positives = 146/189 (77%), Gaps = 4/189 (2%)

Query: 43  SGRKFASYTVFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKK 102
           SGR FA Y++FKGKAALS++P+LPSF++++SG  R+++ GS+M+TF PA+G+RKYD+ KK
Sbjct: 51  SGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKYDWEKK 110

Query: 103 QLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLSVTPLGNDSGYFLNITVL 162
           Q FALSPTEVGSLIS+G  +S EFFHDPSMKSS+ GQV+KSLSV P  + SGYF++++V 
Sbjct: 111 QKFALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVRKSLSVKPHADGSGYFISLSVN 170

Query: 163 NNLQKTTERLSLPISKAEFTVMRTALSFALPHILGWDQALTNH---QPSPSPASKPRVER 219
           N++ KT +   +P++KAEF VM+TA SFALPHI+GW++ LT H   +  PS         
Sbjct: 171 NSILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWNR-LTGHVNTEALPSRNVSHLKTE 229

Query: 220 PHPDSEWER 228
           P  + EW++
Sbjct: 230 PQLELEWDK 238



>AT1G14410.1 | chr1:4929352-4930810 REVERSE LENGTH=264
          Length = 263

 Score =  176 bits (446), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 87/193 (45%), Positives = 125/193 (64%), Gaps = 8/193 (4%)

Query: 40  ENTSGRKFASYTVFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDY 99
           E    R +  ++++KGKAAL++ P  P F  L+SG  +++K+G ++L F P+ G R+YD+
Sbjct: 75  EGLPARFYVGHSIYKGKAALTVDPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDW 134

Query: 100 SKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLSVTPLGNDSGYFLNI 159
           SKKQ+F+LS TE+G+L+SLGP ESCEFFHDP    S EG+V+K L V PL + SG+F N+
Sbjct: 135 SKKQVFSLSVTEIGTLVSLGPRESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNL 194

Query: 160 TVLNNLQKTTERLSLPISKAEFTVMRTALSFALPHILGWDQALTNHQPSPSPASKPRVER 219
           +V N L    E + +PI++AEF V+ +A +F LP+++GW  A  N   S  P    RV  
Sbjct: 195 SVQNKLVNVDESIYIPITRAEFAVLISAFNFVLPYLIGW-HAFAN---SIKPEETSRVNN 250

Query: 220 PHP----DSEWER 228
             P    D EW R
Sbjct: 251 ASPNYGGDYEWNR 263



>AT2G02740.1 | chr2:769389-770993 FORWARD LENGTH=269
          Length = 268

 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 126/194 (64%), Gaps = 9/194 (4%)

Query: 40  ENTSGRKFASYTVFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDY 99
           E +S R +  ++++KGKAAL+++P  P F  LESG  ++ K G ++L F PA G R+YD+
Sbjct: 79  EVSSPRFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDW 138

Query: 100 SKKQLFALSPTEVGSLISLGPAESCEFFHDP-SMKSSHEGQVKKSLSVTPLGNDSGYFLN 158
           S+KQ+F+LS TE+G+L+SLGP ESCEFFHDP   K S EG+V+K L V PL + SG F N
Sbjct: 139 SRKQVFSLSVTEIGNLVSLGPRESCEFFHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFN 198

Query: 159 ITVLNNLQKTTERLSLPISKAEFTVMRTALSFALPHILGWDQALTNHQPSPSPASKPRVE 218
           ++V N L    E + +PI+KAEF V+ +A +F LPH++GW  A  N   S  P    R+ 
Sbjct: 199 LSVQNKLLNVDESVYIPITKAEFAVLISAFNFVLPHLIGW-SAFAN---SIKPEDSNRLN 254

Query: 219 RPHP----DSEWER 228
              P    D EW R
Sbjct: 255 NASPKYGGDYEWSR 268



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,113,792
Number of extensions: 206535
Number of successful extensions: 603
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 3
Length of query: 228
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 133
Effective length of database: 8,502,049
Effective search space: 1130772517
Effective search space used: 1130772517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)