BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0158400 Os02g0158400|AK061569
         (228 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0158400  ssDNA-binding transcriptional regulator family...   468   e-132
Os06g0145800  ssDNA-binding transcriptional regulator family...   109   2e-24

>Os02g0158400 ssDNA-binding transcriptional regulator family protein
          Length = 228

 Score =  468 bits (1203), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQRLSRFVPSSSRRVTDLKDALWSGSLTFQHALSTFAADENTSGRKFASYTVFKGKAALS 60
           MQRLSRFVPSSSRRVTDLKDALWSGSLTFQHALSTFAADENTSGRKFASYTVFKGKAALS
Sbjct: 1   MQRLSRFVPSSSRRVTDLKDALWSGSLTFQHALSTFAADENTSGRKFASYTVFKGKAALS 60

Query: 61  MQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGP 120
           MQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGP
Sbjct: 61  MQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGP 120

Query: 121 AESCEFFHDPSMKSSHEGQVKKSLSVTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAE 180
           AESCEFFHDPSMKSSHEGQVKKSLSVTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAE
Sbjct: 121 AESCEFFHDPSMKSSHEGQVKKSLSVTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAE 180

Query: 181 FTVMRTALSFALPHILGWDQALTNHQPSPSPASKPRVERPHPDSEWER 228
           FTVMRTALSFALPHILGWDQALTNHQPSPSPASKPRVERPHPDSEWER
Sbjct: 181 FTVMRTALSFALPHILGWDQALTNHQPSPSPASKPRVERPHPDSEWER 228



>Os06g0145800 ssDNA-binding transcriptional regulator family protein
          Length = 190

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 69/88 (78%)

Query: 43  SGRKFASYTVFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKK 102
           +GR F++Y+++KGKAA+S+ P  P F  L+SG  +V K G V+L F PAV  R+YD+++K
Sbjct: 89  NGRVFSTYSIYKGKAAMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAPAVATRQYDWTRK 148

Query: 103 QLFALSPTEVGSLISLGPAESCEFFHDP 130
           Q+F+LS  E+GSL++LGP +SCEFFHDP
Sbjct: 149 QVFSLSVWEMGSLLTLGPTDSCEFFHDP 176



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,083,061
Number of extensions: 323304
Number of successful extensions: 1111
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1111
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 131
Effective length of database: 11,971,043
Effective search space: 1568206633
Effective search space used: 1568206633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)