BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0142700 Os06g0142700|AK071423
         (154 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0142700  Cytochrome c oxidase, subunit Vb family protein     286   5e-78
Os01g0612200  Cytochrome c oxidase, subunit Vb family protein     176   5e-45

>Os06g0142700 Cytochrome c oxidase, subunit Vb family protein
          Length = 154

 Score =  286 bits (731), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MWKRATSVLLHHRSALTRRSPAIGGGVLPRALFFSTLDAAQARTRVEDVMPIATGLEREE 60
           MWKRATSVLLHHRSALTRRSPAIGGGVLPRALFFSTLDAAQARTRVEDVMPIATGLEREE
Sbjct: 1   MWKRATSVLLHHRSALTRRSPAIGGGVLPRALFFSTLDAAQARTRVEDVMPIATGLEREE 60

Query: 61  IAAELQGKKRFDMDAPVGPFGTKEAPAVIQSYYNKRIVGCPGGEGEDEHDVVWFWLEKGK 120
           IAAELQGKKRFDMDAPVGPFGTKEAPAVIQSYYNKRIVGCPGGEGEDEHDVVWFWLEKGK
Sbjct: 61  IAAELQGKKRFDMDAPVGPFGTKEAPAVIQSYYNKRIVGCPGGEGEDEHDVVWFWLEKGK 120

Query: 121 PHECPVCTQYFSLEVIGE 138
           PHECPVCTQYFSLEVIGE
Sbjct: 121 PHECPVCTQYFSLEVIGE 138



>Os01g0612200 Cytochrome c oxidase, subunit Vb family protein
          Length = 169

 Score =  176 bits (447), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/102 (80%), Positives = 91/102 (89%)

Query: 35  STLDAAQARTRVEDVMPIATGLEREEIAAELQGKKRFDMDAPVGPFGTKEAPAVIQSYYN 94
           S L +      VEDVMPIATGLEREE+AAEL+G+KRFDMD PVGPFGTKEAPAVI+SYYN
Sbjct: 51  SPLLSGDKPATVEDVMPIATGLEREELAAELKGEKRFDMDPPVGPFGTKEAPAVIESYYN 110

Query: 95  KRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCTQYFSLEVI 136
           KRIVGCPGGEGEDEHDVVWFWL+K +PHECPVC+QYF L+VI
Sbjct: 111 KRIVGCPGGEGEDEHDVVWFWLKKDEPHECPVCSQYFVLKVI 152



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,314,883
Number of extensions: 226475
Number of successful extensions: 455
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 2
Length of query: 154
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 62
Effective length of database: 12,232,113
Effective search space: 758391006
Effective search space used: 758391006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)