Os06g0142700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome c oxidase, subunit Vb family protein.
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Os06g0142700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome c oxidase, subunit Vb family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.53 | 0.363 | 9.85 | -2.54 | 1.67 | 0.48 | 0.643 | -1.86 | -0.583 | 6.54 | 19.4 | 2078 | -- | -- |
| 64.73 | 0.375 | 9.8 | -2.31 | 1.68 | 0.916 | 0.761 | -- | -0.533 | 6.61 | 19 | 2163 | -- | -- |
| 60.44 | 0.362 | 9.85 | -2.53 | 1.68 | 0.49 | -- | -1.89 | -0.584 | 6.53 | 19.2 | 2095 | -- | -- |
| 66.03 | 0.378 | 9.8 | -2.3 | 1.68 | 0.908 | -- | -- | -0.537 | 6.59 | 19.05 | 2187 | -- | -- |
| 204.7 | 0.666 | 9.9 | -2.53 | -- | 0.513 | -- | -1.93 | -0.57 | -- | 19 | 2710 | -- | -- |
| 78.4 | 0.415 | 9.76 | -1.9 | 1.66 | -- | 0.705 | -- | -0.359 | 6.5 | -- | -- | -- | -- |
| 79.64 | 0.418 | 9.76 | -1.89 | 1.67 | -- | -- | -- | -0.362 | 6.48 | -- | -- | -- | -- |
| 207.2 | 0.67 | 9.84 | -2.36 | -- | 1.15 | -- | -- | -0.508 | -- | 18.5 | 2743 | -- | -- |
| 106.21 | 0.48 | 9.6 | -- | 1.53 | -1.3 | -- | -- | 0.248 | 6.36 | 21.9 | 47520 | -- | -- |
| 224.34 | 0.7 | 9.8 | -1.85 | -- | -- | -- | -- | -0.327 | -- | -- | -- | -- | -- |
| 173.71 | 0.617 | 9.72 | -- | 1.64 | -- | -- | -- | -0.151 | 6.54 | -- | -- | -- | -- |
| 247.44 | 0.733 | 9.65 | -- | -- | -1.18 | -- | -- | 0.347 | -- | 26.27 | 46700 | -- | -- |
| 314.35 | 0.828 | 9.75 | -- | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.64 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 2 | 56.90 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 6 | 57.54 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 8 | 57.61 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 26 | 57.87 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 27 | 57.88 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 40 | 57.97 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 12 |
| 47 | 58.03 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 13 |
| 84 | 58.26 | humidity | 80 | 14400 | > th | dose dependent | sin | 11 | NA |
| 89 | 58.27 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 119 | 58.45 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 141 | 58.54 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 155 | 58.63 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 156 | 58.63 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 157 | 58.65 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 169 | 58.70 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 201 | 58.85 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 204 | 58.85 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 206 | 58.85 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 217 | 58.90 | atmosphere | 995 | 43200 | > th | dose independent | sin | 22 | NA |
| 228 | 58.92 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 8 |
| 244 | 58.97 | atmosphere | 995 | 43200 | < th | dose independent | sin | 21 | NA |
| 251 | 58.98 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 254 | 58.99 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 261 | 59.00 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 268 | 59.02 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 276 | 59.04 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 280 | 59.05 | wind | 9 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 299 | 59.07 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 13 |
| 300 | 59.07 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 10 |
| 339 | 59.14 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 344 | 59.14 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 3 |
| 361 | 59.16 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 3 |
| 369 | 59.17 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 370 | 59.17 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 378 | 59.18 | humidity | 90 | 14400 | > th | dose independent | rect. | 14 | 17 |
| 404 | 59.22 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 414 | 59.24 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 421 | 59.26 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 426 | 59.27 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 435 | 59.28 | humidity | 90 | 14400 | > th | dose independent | sin | 8 | NA |
| 438 | 59.28 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 481 | 59.34 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 487 | 59.34 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 497 | 59.36 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 510 | 59.37 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 659 | 59.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 739 | 59.82 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 755 | 59.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 759 | 59.85 | radiation | 10 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 787 | 59.91 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 828 | 60.00 | wind | 9 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 927 | 60.16 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 936 | 60.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 958 | 60.23 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 8 |