BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0142700 Os06g0142700|AK071423
(154 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80230.1 | chr1:30169784-30170999 REVERSE LENGTH=172 164 2e-41
AT3G15640.1 | chr3:5299273-5301371 FORWARD LENGTH=177 148 1e-36
AT1G52710.1 | chr1:19638627-19640112 REVERSE LENGTH=91 108 1e-24
>AT1G80230.1 | chr1:30169784-30170999 REVERSE LENGTH=172
Length = 171
Score = 164 bits (415), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/125 (64%), Positives = 91/125 (72%)
Query: 12 HRSALTRRSPAIGGGVLPRALFFSTLDAAQARTRVEDVMPIATGLEREEIAAELQGKKRF 71
H S TR S + L S + RVEDVMPIATG E+EE+ AEL+G+K
Sbjct: 33 HLSLSTRASSIPAYSSIFSRLIGSAAADTAVKKRVEDVMPIATGHEKEELQAELEGRKLD 92
Query: 72 DMDAPVGPFGTKEAPAVIQSYYNKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCTQYF 131
D+D P GPFGTKEAPAV++SYY+ RIVGCPGGEGEDEHDVVWFWLEKGK ECPVCTQYF
Sbjct: 93 DIDFPEGPFGTKEAPAVVKSYYDMRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYF 152
Query: 132 SLEVI 136
LEV+
Sbjct: 153 KLEVV 157
>AT3G15640.1 | chr3:5299273-5301371 FORWARD LENGTH=177
Length = 176
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/122 (64%), Positives = 94/122 (77%), Gaps = 1/122 (0%)
Query: 15 ALTRRSPAIGGGVLPRALFFSTLDAAQARTRVEDVMPIATGLEREEIAAELQGKKRFDMD 74
A R + + V+PR F S A +VEDVMPIATG E+EE+ AEL+G++ D+D
Sbjct: 38 AANRSAISASSFVIPRR-FSSDSVETPATKKVEDVMPIATGHEKEELEAELEGRRLDDID 96
Query: 75 APVGPFGTKEAPAVIQSYYNKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCTQYFSLE 134
P GPFGTKEAPA+++SYY+KRIVGCPGGEGEDEHDVVWFWLEKGK ECPVCTQYF LE
Sbjct: 97 FPEGPFGTKEAPAIVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELE 156
Query: 135 VI 136
V+
Sbjct: 157 VV 158
>AT1G52710.1 | chr1:19638627-19640112 REVERSE LENGTH=91
Length = 90
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 57/71 (80%)
Query: 61 IAAELQGKKRFDMDAPVGPFGTKEAPAVIQSYYNKRIVGCPGGEGEDEHDVVWFWLEKGK 120
+ E G++ D+D P PFGTKE+PAV+QSY++KR +GC GGEGED HDVVWFWL+KGK
Sbjct: 4 LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63
Query: 121 PHECPVCTQYF 131
ECPVC+QYF
Sbjct: 64 SFECPVCSQYF 74
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,157,676
Number of extensions: 128601
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 3
Length of query: 154
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 64
Effective length of database: 8,639,129
Effective search space: 552904256
Effective search space used: 552904256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)