BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0142600 Os06g0142600|J033123F22
         (416 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0142600  Conserved hypothetical protein                      727   0.0  
Os01g0566100  Conserved hypothetical protein                      488   e-138

>Os06g0142600 Conserved hypothetical protein
          Length = 416

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/416 (85%), Positives = 357/416 (85%)

Query: 1   MATRXXXXXXXXKEAKGKVMGPLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRFS 60
           MATR        KEAKGKVMGPLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRFS
Sbjct: 1   MATRGGGGGGGGKEAKGKVMGPLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRFS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXVYGRDSSLFQPFNVPSNRPGHSTEXXXXXXXXX 120
                                      VYGRDSSLFQPFNVPSNRPGHSTE         
Sbjct: 61  GGGGGGGVGGSPAHSTSAASQSQSQSQVYGRDSSLFQPFNVPSNRPGHSTEKINSDKINK 120

Query: 121 XXXGSRKELGMLSSQTKGMDIYASRSTAEAPQRRAENTIKSSSGKRLADDDEFMVPSVFN 180
              GSRKELGMLSSQTKGMDIYASRSTAEAPQRRAENTIKSSSGKRLADDDEFMVPSVFN
Sbjct: 121 KISGSRKELGMLSSQTKGMDIYASRSTAEAPQRRAENTIKSSSGKRLADDDEFMVPSVFN 180

Query: 181 SRFPQYSTQENAGVQDQSTPLVAANPHXXXXXXXXXXXXCYNTVSKKLERIHVSDVKSRT 240
           SRFPQYSTQENAGVQDQSTPLVAANPH            CYNTVSKKLERIHVSDVKSRT
Sbjct: 181 SRFPQYSTQENAGVQDQSTPLVAANPHKSPSTVSKSSTKCYNTVSKKLERIHVSDVKSRT 240

Query: 241 PLKDKEMEAAQTSKNVEVEKSSSFHASKDMFESRHAKVYPKMDKTGIINDSDEPHGGNSG 300
           PLKDKEMEAAQTSKNVEVEKSSSFHASKDMFESRHAKVYPKMDKTGIINDSDEPHGGNSG
Sbjct: 241 PLKDKEMEAAQTSKNVEVEKSSSFHASKDMFESRHAKVYPKMDKTGIINDSDEPHGGNSG 300

Query: 301 HQATSRNGGSMKFQNPPMRRNEISSNPSSENTDRHYNLPQGGIEETGTKRKRLLEQHDAE 360
           HQATSRNGGSMKFQNPPMRRNEISSNPSSENTDRHYNLPQGGIEETGTKRKRLLEQHDAE
Sbjct: 301 HQATSRNGGSMKFQNPPMRRNEISSNPSSENTDRHYNLPQGGIEETGTKRKRLLEQHDAE 360

Query: 361 KSDDVSRLLEQHDAENIDDVSDSSVECITGWEISPDKIVGAIGTKHFWKARRAIMK 416
           KSDDVSRLLEQHDAENIDDVSDSSVECITGWEISPDKIVGAIGTKHFWKARRAIMK
Sbjct: 361 KSDDVSRLLEQHDAENIDDVSDSSVECITGWEISPDKIVGAIGTKHFWKARRAIMK 416



>Os01g0566100 Conserved hypothetical protein
          Length = 396

 Score =  488 bits (1257), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/406 (63%), Positives = 286/406 (70%), Gaps = 24/406 (5%)

Query: 14  EAKGKVMGPLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRFSXXXXXXXXXXXXX 73
           E +GKVMGPLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRFS             
Sbjct: 12  EERGKVMGPLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRFSGGGGALASARGSL 71

Query: 74  XXXXXXXXXXXXXXVYGRDSSLFQPFNVPSNRPGHSTEXXXXXXXXXXXXGSRKELGMLS 133
                         VYG D  LF+PFNVPSN PG S E            GSRK+ GMLS
Sbjct: 72  ARSTSAASQSQ---VYGCDMPLFEPFNVPSNGPGQSVEKMNSNSVNRQINGSRKDSGMLS 128

Query: 134 SQTKGMDIYASRSTAE-APQRRAENTIKSSSGKRLADDDEFMVPSVFNSRFPQYSTQENA 192
           +Q KG+D Y S S AE APQ+R E  IKSSSG++LADDDEF+VPSVF++RFPQYST+E A
Sbjct: 129 TQPKGIDKYGSGSRAECAPQQRVEKGIKSSSGRKLADDDEFIVPSVFSARFPQYSTKERA 188

Query: 193 GVQDQSTPLVAANPHXXXXXXXXXXXXCYNTVSKKLERIHVSDVKSRTPLKDKEMEAAQT 252
           GVQ++STPLVA +PH            CYNTVSK LERI+VSDVKSR   KDKE   AQT
Sbjct: 189 GVQEESTPLVALSPHKSPPAVSKSPTKCYNTVSKNLERINVSDVKSRGSQKDKETGPAQT 248

Query: 253 SKNVEVEKSSSFHASKDMFESRHAKVYPKMDKTGIINDSDEPHGGNSGHQATSRNGGSMK 312
            KNVEVE  SSF ASKDMF S+HAKV P   KTG IND DEPH  NS HQATSRNG S+K
Sbjct: 249 LKNVEVEHFSSFEASKDMFGSKHAKVCP---KTGTINDLDEPHLENSEHQATSRNGSSVK 305

Query: 313 FQNPPMRRNEISSNPSS--ENTDRHYNLPQGGIEETGTKRKRLLEQHDAEKSDDVSRLLE 370
           FQNPP+RRN IS+ PS   ENT+ H NLPQGG++E GTKRKRL  Q +AEK         
Sbjct: 306 FQNPPVRRNTISAKPSPGIENTNGHCNLPQGGLKEAGTKRKRLEAQDNAEK--------- 356

Query: 371 QHDAENIDDVSDSSVECITGWEISPDKIVGAIGTKHFWKARRAIMK 416
                 IDD+SDSSVECIT WEISPD+IVGAIG KHFWKARRAI+K
Sbjct: 357 ------IDDLSDSSVECITAWEISPDEIVGAIGAKHFWKARRAIIK 396



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.126    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,852,752
Number of extensions: 504968
Number of successful extensions: 1145
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1137
Number of HSP's successfully gapped: 2
Length of query: 416
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 313
Effective length of database: 11,657,759
Effective search space: 3648878567
Effective search space used: 3648878567
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)