Os06g0142600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0142600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.45 | 0.377 | 12.7 | 0.109 | 0.617 | 0.241 | -0.533 | 2.06 | 0.0087 | 4.24 | 30.1 | 5060 | -- | -- |
| 64.93 | 0.375 | 12.7 | -0.128 | 0.633 | 0.397 | -0.569 | -- | -0.0579 | 3.98 | 29.8 | 5828 | -- | -- |
| 65.14 | 0.376 | 12.7 | 0.0981 | 0.62 | 0.262 | -- | 1.93 | 0.00777 | 4.36 | 29.8 | 5018 | -- | -- |
| 64.96 | 0.375 | 12.7 | -0.286 | 0.611 | 0.46 | -- | -- | -0.0438 | 4.08 | 29.9 | 5828 | -- | -- |
| 85.05 | 0.43 | 12.7 | 0.145 | -- | 0.258 | -- | 2.65 | 0.0304 | -- | 30.3 | 3970 | -- | -- |
| 74.44 | 0.404 | 12.8 | -0.146 | 0.631 | -- | -0.492 | -- | -0.0868 | 4.04 | -- | -- | -- | -- |
| 75.12 | 0.406 | 12.8 | -0.14 | 0.629 | -- | -- | -- | -0.0841 | 4.11 | -- | -- | -- | -- |
| 83.64 | 0.426 | 12.7 | -0.288 | -- | 0.509 | -- | -- | -0.00766 | -- | 29.81 | 5595 | -- | -- |
| 66.99 | 0.381 | 12.7 | -- | 0.611 | 0.415 | -- | -- | -0.0304 | 4.09 | 29.9 | 5922 | -- | -- |
| 96.63 | 0.459 | 12.8 | -0.114 | -- | -- | -- | -- | -0.0673 | -- | -- | -- | -- | -- |
| 75.64 | 0.407 | 12.7 | -- | 0.626 | -- | -- | -- | -0.0685 | 4.11 | -- | -- | -- | -- |
| 85.57 | 0.431 | 12.7 | -- | -- | 0.474 | -- | -- | 0.0133 | -- | 29.8 | 5612 | -- | -- |
| 96.97 | 0.46 | 12.8 | -- | -- | -- | -- | -- | -0.0546 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.26 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 60.40 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 4 | 61.38 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 6 | 62.24 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 29 | 63.66 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 24 | 3 |
| 30 | 63.66 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 24 | 3 |
| 37 | 63.87 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 1 | 1 |
| 47 | 63.87 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 1 | 1 |
| 57 | 63.88 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 61 | 64.01 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 18 | 14 |
| 63 | 64.07 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 67 | 64.18 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 69 | 64.24 | wind | 1.0 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 71 | 64.31 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 22 | 9 |
| 87 | 64.45 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 108 | 64.69 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 109 | 64.69 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 155 | 64.85 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 164 | 64.88 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 165 | 64.88 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 167 | 64.89 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 174 | 64.91 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 177 | 64.92 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 192 | 64.96 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 193 | 64.96 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 209 | 65.02 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 216 | 65.04 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 13 |
| 235 | 65.05 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 246 | 65.07 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 248 | 65.07 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 274 | 65.08 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 278 | 65.09 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 10 | 7 |
| 287 | 65.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 295 | 65.11 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 8 |
| 302 | 65.12 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 10 | NA |
| 369 | 65.16 | temperature | 30.0 | 4320 | < th | dose independent | sin | 16 | NA |
| 388 | 65.16 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 420 | 65.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 421 | 65.18 | temperature | 30.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 471 | 65.20 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 578 | 65.23 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 586 | 65.24 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 622 | 65.25 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 627 | 65.25 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 663 | 65.26 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 691 | 65.28 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 711 | 65.28 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 735 | 65.29 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 736 | 65.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 753 | 65.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 782 | 65.30 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 804 | 65.31 | temperature | 30.0 | 4320 | > th | dose independent | no | NA | NA |
| 806 | 65.31 | temperature | 30.0 | 4320 | < th | dose independent | no | NA | NA |
| 836 | 65.31 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 974 | 65.31 | temperature | 30.0 | 720 | < th | dose independent | rect. | 4 | 22 |