BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0142600 Os06g0142600|J033123F22
         (416 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25930.1  | chr2:11059459-11063178 FORWARD LENGTH=696           88   7e-18

>AT2G25930.1 | chr2:11059459-11063178 FORWARD LENGTH=696
          Length = 695

 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 170/409 (41%), Gaps = 92/409 (22%)

Query: 18  KVMGPLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRFSXXXXXXXXXXXXXXXXX 77
           K++ P+FPRLHVNDA KGG PRAPPRNKMALYEQ ++PS RF                  
Sbjct: 9   KILEPMFPRLHVNDADKGG-PRAPPRNKMALYEQLSIPSQRFGDHGTMNSRSNNT----- 62

Query: 78  XXXXXXXXXXVYGRDSSLFQPFNVPSNRPGHSTEXXXXXXXXXXXXGSRKELGMLSSQTK 137
                          S+L  P   PS++P                     E     SQ  
Sbjct: 63  ---------------STLVHPG--PSSQPCGVERNLSVQHLDSSAANQATE--KFVSQMS 103

Query: 138 GMDIYASRSTAEAPQRRAENTIKSSSGKRLADDDEFMVPSVFNSRFPQYSTQENAGVQ-D 196
            M+    RS+A+  QR           K + ++++F VP   NSR  Q   +  +G++ +
Sbjct: 104 FME--NVRSSAQHDQR-----------KMVREEEDFAVPVYINSRRSQSHGRTKSGIEKE 150

Query: 197 QSTPLVAANPH-----XXXXXXXXXXXXCYNTVSKKLERIHVSDVKSRTPLKDKEMEAAQ 251
           + TP+VA + H                 C  T SK   R  V    +R+      ++ + 
Sbjct: 151 KHTPMVAPSSHHSIRFQEVNQTGSKQNVCLATCSKPEVRDQVK-ANARSGGFVISLDVSV 209

Query: 252 TSKNVEVEKSSSFHASKDMF------ESRHAKVYPKMDKTGIINDSDEPHGGNSGHQATS 305
           T + +++EKS+S H   + +      ESR+ ++Y    KT  + D+D    G   H AT 
Sbjct: 210 TEE-IDLEKSASSHDRVNDYNASLRQESRN-RLYRDGGKTR-LKDTD---NGAESHLATE 263

Query: 306 RNGGSMKFQNPPMRRNEISSNPSSENTDRHYNLPQGGIEETGTKRKRLLEQHDAEKSDDV 365
            +              E   +P   + DR Y+                       KS   
Sbjct: 264 NHS------------QEGHGSPEDIDNDREYS-----------------------KSRAC 288

Query: 366 SRLLEQHDAENIDDVSDSSVECITGWEISPDKIVGAIGTKHFWKARRAI 414
           + L + ++  + D   DS V+ I+  ++SPD +VG +G K FW+AR+AI
Sbjct: 289 ASLQQINEEASDDVSDDSMVDSISSIDVSPDDVVGILGQKRFWRARKAI 337



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.126    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,004,820
Number of extensions: 312987
Number of successful extensions: 839
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 837
Number of HSP's successfully gapped: 2
Length of query: 416
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 315
Effective length of database: 8,337,553
Effective search space: 2626329195
Effective search space used: 2626329195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)