BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0137100 Os06g0137100|J090041P11
         (110 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0137100  Conserved hypothetical protein                      234   9e-63
Os03g0152900  Kinesin, motor region domain containing protein      72   6e-14

>Os06g0137100 Conserved hypothetical protein
          Length = 110

 Score =  234 bits (598), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MTMSSISYFYPLPDKLQTRLRGEGGIKALLGMVKCGHPDVLAQVARGIANFAKCESRAAT 60
           MTMSSISYFYPLPDKLQTRLRGEGGIKALLGMVKCGHPDVLAQVARGIANFAKCESRAAT
Sbjct: 1   MTMSSISYFYPLPDKLQTRLRGEGGIKALLGMVKCGHPDVLAQVARGIANFAKCESRAAT 60

Query: 61  QGNGTDQSNVHMFSLMSLSLIVLWYEWVTHSTFQRCHARDIFCFSDCNGT 110
           QGNGTDQSNVHMFSLMSLSLIVLWYEWVTHSTFQRCHARDIFCFSDCNGT
Sbjct: 61  QGNGTDQSNVHMFSLMSLSLIVLWYEWVTHSTFQRCHARDIFCFSDCNGT 110



>Os03g0152900 Kinesin, motor region domain containing protein
          Length = 996

 Score = 72.4 bits (176), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 14  DKLQTRLRGEGGIKALLGMVKCGHPDVLAQVARGIANFAKCESRAATQGNGTDQS 68
           +KL   L+ +GGIKALLGM + GH +V+AQ+ARG+ANFAKCESR  +QG+   +S
Sbjct: 859 EKLHVMLKQDGGIKALLGMFRTGHNEVIAQIARGMANFAKCESRVISQGHRKGRS 913



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,833,715
Number of extensions: 128296
Number of successful extensions: 370
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 2
Length of query: 110
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 33
Effective length of database: 13,015,323
Effective search space: 429505659
Effective search space used: 429505659
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)