Os06g0137100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0137100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.65 | 0.3 | 7.46 | -1.3 | 0.508 | 1.12 | 0.17 | -2.22 | 0.214 | 5.12 | 26 | 5506 | -- | -- |
| 42.04 | 0.302 | 7.41 | -0.8 | 0.499 | 0.963 | 0.135 | -- | 0.237 | 5.15 | 23.33 | 5512 | -- | -- |
| 40.71 | 0.297 | 7.46 | -1.3 | 0.506 | 1.12 | -- | -2.26 | 0.214 | 5.07 | 26.11 | 5522 | -- | -- |
| 41.89 | 0.301 | 7.42 | -0.806 | 0.52 | 0.948 | -- | -- | 0.196 | 5.03 | 22.02 | 5514 | -- | -- |
| 53.97 | 0.342 | 7.46 | -1.3 | -- | 1.15 | -- | -2.23 | 0.227 | -- | 26.37 | 5570 | -- | -- |
| 72.04 | 0.398 | 7.37 | -0.394 | 0.562 | -- | 0.239 | -- | 0.392 | 4.67 | -- | -- | -- | -- |
| 72.19 | 0.398 | 7.37 | -0.395 | 0.563 | -- | -- | -- | 0.391 | 4.65 | -- | -- | -- | -- |
| 55.18 | 0.346 | 7.39 | -0.713 | -- | 0.943 | -- | -- | 0.348 | -- | 26.1 | 5573 | -- | -- |
| 53.81 | 0.342 | 7.38 | -- | 0.494 | 0.648 | -- | -- | 0.345 | 4.93 | 27.8 | 6977 | -- | -- |
| 89.06 | 0.441 | 7.38 | -0.374 | -- | -- | -- | -- | 0.405 | -- | -- | -- | -- | -- |
| 76.31 | 0.409 | 7.36 | -- | 0.556 | -- | -- | -- | 0.435 | 4.67 | -- | -- | -- | -- |
| 66.49 | 0.38 | 7.36 | -- | -- | 0.73 | -- | -- | 0.503 | -- | 28 | 5569 | -- | -- |
| 92.74 | 0.45 | 7.37 | -- | -- | -- | -- | -- | 0.447 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.13 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 4 | 41.20 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 10 | 41.27 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 13 | 41.27 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 15 | 41.29 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 27 | 41.31 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 44 | 41.48 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 46 | 41.50 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 48 | 41.50 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 71 | 41.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 116 | 41.93 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 120 | 41.99 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 123 | 42.04 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 161 | 42.21 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 182 | 42.29 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 186 | 42.33 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 188 | 42.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 193 | 42.39 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 194 | 42.40 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 196 | 42.41 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 218 | 42.44 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 224 | 42.48 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 249 | 42.53 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 264 | 42.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 5 |
| 283 | 42.61 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 287 | 42.62 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 327 | 42.67 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 349 | 42.72 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 360 | 42.72 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 364 | 42.74 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 403 | 42.87 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 409 | 42.89 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 412 | 42.91 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 436 | 42.99 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 459 | 43.03 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 6 |
| 470 | 43.06 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 477 | 43.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 480 | 43.09 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 484 | 43.10 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 487 | 43.11 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 493 | 43.13 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 498 | 43.14 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 532 | 43.21 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 541 | 43.24 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 16 |
| 542 | 43.25 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 543 | 43.25 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 550 | 43.26 | radiation | 40 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 554 | 43.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 13 |
| 579 | 43.30 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 580 | 43.30 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 588 | 43.31 | temperature | 25 | 4320 | > th | dose dependent | sin | 2 | NA |
| 592 | 43.31 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 4 |
| 603 | 43.32 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 629 | 43.34 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 4 |
| 636 | 43.35 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 662 | 43.37 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 674 | 43.38 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 689 | 43.40 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 713 | 43.41 | temperature | 20 | 4320 | > th | dose dependent | rect. | 16 | 18 |
| 771 | 43.47 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 775 | 43.47 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 791 | 43.48 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 793 | 43.48 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 804 | 43.50 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 862 | 43.54 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 20 |
| 899 | 43.57 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 920 | 43.58 | temperature | 20 | 4320 | > th | dose dependent | rect. | 16 | 7 |
| 935 | 43.58 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 969 | 43.60 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 974 | 43.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 17 |
| 981 | 43.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 23 |
| 987 | 43.61 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |