BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0137100 Os06g0137100|J090041P11
         (110 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12430.2  | chr1:4234122-4238552 REVERSE LENGTH=921             99   5e-22
AT1G01950.3  | chr1:325473-330403 FORWARD LENGTH=916               96   5e-21

>AT1G12430.2 | chr1:4234122-4238552 REVERSE LENGTH=921
          Length = 920

 Score = 99.0 bits (245), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/69 (71%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 14  DKLQTRLRGEGGIKALLGMVKCGHPDVLAQVARGIANFAKCESRAATQGNGTDQSNVHMF 73
           DKLQT+LR EGGI ALLGMV+CGHPDVLAQVARGIANFAKCESRA+TQ  GT +    + 
Sbjct: 775 DKLQTKLRSEGGIAALLGMVRCGHPDVLAQVARGIANFAKCESRASTQA-GTKRGKSLLI 833

Query: 74  SLMSLSLIV 82
              +LS IV
Sbjct: 834 EDGALSWIV 842



>AT1G01950.3 | chr1:325473-330403 FORWARD LENGTH=916
          Length = 915

 Score = 95.5 bits (236), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/55 (80%), Positives = 48/55 (87%)

Query: 14  DKLQTRLRGEGGIKALLGMVKCGHPDVLAQVARGIANFAKCESRAATQGNGTDQS 68
           DKLQ RL  +GGIKALLGMV+CGHPDVLAQVARGIANFAKCESRA TQG  + +S
Sbjct: 772 DKLQARLWSDGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRATTQGVKSGRS 826



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,409,999
Number of extensions: 77962
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 2
Length of query: 110
Length of database: 11,106,569
Length adjustment: 79
Effective length of query: 31
Effective length of database: 8,940,705
Effective search space: 277161855
Effective search space used: 277161855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)