BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0136300 Os06g0136300|AK109132
         (123 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0136300  Conserved hypothetical protein                      169   4e-43
Os02g0527200  Conserved hypothetical protein                      100   3e-22

>Os06g0136300 Conserved hypothetical protein
          Length = 123

 Score =  169 bits (429), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 88/123 (71%), Positives = 88/123 (71%)

Query: 1   MAPSAVQXXXXXXXXXXXXXXXXQXXXXXXXXXNVTVEQSLWPVHVVIGADCTVADLVRA 60
           MAPSAVQ                Q         NVTVEQSLWPVHVVIGADCTVADLVRA
Sbjct: 1   MAPSAVQAMSSSHGAAAAMVAAGQRRRLTRLLLNVTVEQSLWPVHVVIGADCTVADLVRA 60

Query: 61  AVDAYVREGRRPPLPSXXXXXXXXXXFELHFSKYSLESLRPEEKLVDLGSRNFFLCARRT 120
           AVDAYVREGRRPPLPS          FELHFSKYSLESLRPEEKLVDLGSRNFFLCARRT
Sbjct: 61  AVDAYVREGRRPPLPSAGGGGDAAAGFELHFSKYSLESLRPEEKLVDLGSRNFFLCARRT 120

Query: 121 PAA 123
           PAA
Sbjct: 121 PAA 123



>Os02g0527200 Conserved hypothetical protein
          Length = 200

 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 63/85 (74%), Gaps = 5/85 (5%)

Query: 34  NVTVEQSLWPVHVVIGADCTVADLVRAAVDAYVREGRRPPLPSXXXXXXXXXXFELHFSK 93
            V V QS+WP+HV+  A+ +VADLV AAV+ Y+REGRRP LPS          F LHFS+
Sbjct: 75  TVAVRQSMWPLHVMARAEWSVADLVAAAVELYIREGRRPLLPS-----ADPAAFGLHFSQ 129

Query: 94  YSLESLRPEEKLVDLGSRNFFLCAR 118
           +SL+SL PEEKL++LGSR+FFLC +
Sbjct: 130 FSLQSLNPEEKLMELGSRSFFLCPK 154



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,092,485
Number of extensions: 84865
Number of successful extensions: 129
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 2
Length of query: 123
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 35
Effective length of database: 12,440,969
Effective search space: 435433915
Effective search space used: 435433915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)