Os06g0136300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0136300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.45 | 0.576 | 10.3 | -1.54 | 1.83 | -3.46 | -0.955 | -0.699 | -0.189 | 23.5 | 5.312 | 243 | 12.3 | 23 |
| 150.44 | 0.571 | 10.3 | -1.47 | 1.85 | -3.46 | -0.962 | -- | -0.196 | 23.6 | 4.223 | 240 | 12.4 | 22.9 |
| 153.5 | 0.577 | 10.3 | -1.62 | 1.94 | -3.39 | -- | -1.28 | -0.215 | 23.7 | 4.153 | 249 | 12.3 | 22.8 |
| 154.36 | 0.579 | 10.3 | -1.42 | 1.89 | -3.43 | -- | -- | -0.171 | 23.7 | 3.541 | 244 | 12.4 | 22.9 |
| 219.99 | 0.691 | 10.2 | -1.12 | -- | -4.14 | -- | 0.973 | -0.0165 | -- | 3.405 | 8 | 14.7 | 24 |
| 286.48 | 0.793 | 10.4 | -2.09 | 1.67 | -- | -0.604 | -- | -0.64 | 0.882 | -- | -- | -- | -- |
| 287.95 | 0.795 | 10.3 | -2.07 | 1.68 | -- | -- | -- | -0.637 | 0.968 | -- | -- | -- | -- |
| 219.97 | 0.691 | 10.2 | -1.26 | -- | -4.11 | -- | -- | -0.0569 | -- | 1.031 | 5 | 16.2 | 24 |
| 202.27 | 0.662 | 10.2 | -- | 1.83 | -4.07 | -- | -- | 0.0662 | 23.3 | 4.461 | 243 | 12.3 | 23 |
| 463.23 | 1.01 | 10.3 | -2 | -- | -- | -- | -- | -0.605 | -- | -- | -- | -- | -- |
| 400.63 | 0.936 | 10.3 | -- | 1.64 | -- | -- | -- | -0.407 | 0.915 | -- | -- | -- | -- |
| 259.23 | 0.75 | 10.2 | -- | -- | -4.51 | -- | -- | 0.127 | -- | -1.107 | 5 | 17.2 | 24 |
| 569.26 | 1.11 | 10.3 | -- | -- | -- | -- | -- | -0.383 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 154.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 9 | 163.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 17 | 166.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 18 | 166.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 20 | 166.54 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 20 |
| 25 | 167.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 26 | 167.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 55 | 170.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 58 | 170.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 20 |
| 62 | 170.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 66 | 170.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 17 |
| 94 | 172.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 19 |
| 98 | 172.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 102 | 172.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 110 | 172.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 124 | 173.10 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 170 | 174.00 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 202 | 174.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 13 |
| 215 | 174.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 234 | 174.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 272 | 175.14 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 282 | 175.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 314 | 175.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 18 |
| 363 | 176.11 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 441 | 176.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 524 | 177.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 598 | 177.90 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 623 | 178.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 20 |
| 625 | 178.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 626 | 178.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 747 | 178.82 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 9 |
| 749 | 178.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 19 |
| 848 | 179.37 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 946 | 179.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 22 |