BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0136300 Os06g0136300|AK109132
         (123 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27830.1  | chr2:11860734-11861306 FORWARD LENGTH=191           89   4e-19
AT4G22758.1  | chr4:11958477-11959904 FORWARD LENGTH=256           56   4e-09

>AT2G27830.1 | chr2:11860734-11861306 FORWARD LENGTH=191
          Length = 190

 Score = 89.4 bits (220), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 59/86 (68%), Gaps = 5/86 (5%)

Query: 34  NVTVEQSLWPVHVVIGADCTVADLVRAAVDAYVREGRRPPLPSXXXXXXXXXXFELHFSK 93
           NVTV+ SL  V ++I  + TV+DL+ AAV  YV+E RRP LP           F+LH+S+
Sbjct: 75  NVTVQGSLGAVQIIISPESTVSDLIDAAVRQYVKEARRPFLPESEPSR-----FDLHYSQ 129

Query: 94  YSLESLRPEEKLVDLGSRNFFLCARR 119
           +SLES+  +EKL+ LGSRNFFLC R+
Sbjct: 130 FSLESIVRDEKLISLGSRNFFLCGRK 155



>AT4G22758.1 | chr4:11958477-11959904 FORWARD LENGTH=256
          Length = 255

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 34  NVTVEQSLWPVHVVIGADCTVADLVRAAVDAYVREGRRPPLPSXXXXXXXXXXFELHFSK 93
           +V VE S  PV  ++   C V + ++  VD Y +EGR P L            FELH S 
Sbjct: 127 SVAVEGSPGPVRAMVKLSCNVEETIKIVVDKYCKEGRTPKL-------DRDSAFELHQSH 179

Query: 94  YSLESLRPEEKLVDLGSRNFFL 115
           +S++ L   E + +LGSR+F++
Sbjct: 180 FSIQCLEKREIIGELGSRSFYM 201



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,772,829
Number of extensions: 45847
Number of successful extensions: 58
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 123
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 37
Effective length of database: 8,748,793
Effective search space: 323705341
Effective search space used: 323705341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)