BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0134000 Os06g0134000|AK106717
         (128 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0134000  Similar to 40S ribosomal protein S20                261   1e-70
Os03g0249400  Similar to 40S ribosomal protein S20 (S22) (Fr...   204   2e-53
Os10g0170200  Similar to 40S ribosomal protein S20 (S22) (Fr...   194   1e-50
AK108091                                                          159   4e-40
AK062490                                                          133   3e-32

>Os06g0134000 Similar to 40S ribosomal protein S20
          Length = 128

 Score =  261 bits (666), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAAADVAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVK 60
           MAAADVAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVK
Sbjct: 1   MAAADVAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVK 60

Query: 61  GPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVE 120
           GPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVE
Sbjct: 61  GPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVE 120

Query: 121 VEVTISDQ 128
           VEVTISDQ
Sbjct: 121 VEVTISDQ 128



>Os03g0249400 Similar to 40S ribosomal protein S20 (S22) (Fragment)
          Length = 127

 Score =  204 bits (518), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/128 (80%), Positives = 113/128 (88%), Gaps = 3/128 (2%)

Query: 1   MAAADVAYAPPMKSGKIGFESSQEVQ-HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKV 59
           MAAA V     MK GK+G E + E+Q +RIRITLSSK+VKNLEKVC DLVKGAKDK L+V
Sbjct: 1   MAAAAVYGG--MKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRV 58

Query: 60  KGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGV 119
           KGPVR+PTKVLHITTRKSPCGEGTNTWDRFE R+HKRVIDL+SS DVVKQITSITIEPGV
Sbjct: 59  KGPVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGV 118

Query: 120 EVEVTISD 127
           EVEVTI+D
Sbjct: 119 EVEVTIAD 126



>Os10g0170200 Similar to 40S ribosomal protein S20 (S22) (Fragment)
          Length = 130

 Score =  194 bits (493), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/112 (83%), Positives = 105/112 (93%), Gaps = 1/112 (0%)

Query: 17  IGFESSQEVQ-HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTR 75
           +G E ++E+Q +RIRITLSSK+VKNLEKVC DLVKGAKDK L+VKGPVR+PTKVLHITTR
Sbjct: 18  LGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIPTKVLHITTR 77

Query: 76  KSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127
           KSPCGEGTNTWDRFE R+HKRVIDL+SS DVVKQITSITIEPGVEVEVTI+D
Sbjct: 78  KSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 129



>AK108091 
          Length = 122

 Score =  159 bits (402), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 74/99 (74%), Positives = 89/99 (89%)

Query: 27  HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTW 86
           H+IRITL+S++VKNLEKVC DLV  +KDK L+VKGPVR+PTKVL  TTRKSPCGEG+ TW
Sbjct: 20  HKIRITLTSRNVKNLEKVCTDLVNRSKDKQLRVKGPVRLPTKVLSHTTRKSPCGEGSKTW 79

Query: 87  DRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125
           D FEMR+HKR+IDL S +++VKQITSI++EPGVEVEVTI
Sbjct: 80  DHFEMRIHKRLIDLHSPSEIVKQITSISLEPGVEVEVTI 118



>AK062490 
          Length = 118

 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 82/101 (81%)

Query: 27  HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTW 86
           H+IRITLSS++ K LEKVC DL+  AKD+ +K +GPVR+PT+ L +T RKSPCG G+ +W
Sbjct: 17  HKIRITLSSRNPKALEKVCADLMLRAKDQKIKTRGPVRLPTRNLKLTVRKSPCGNGSASW 76

Query: 87  DRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127
           D +EM ++KR+IDL +  DVVKQIT+I IEPGV+++V +++
Sbjct: 77  DTYEMAIYKRLIDLYAVLDVVKQITAINIEPGVDIDVAVAE 117



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,880,397
Number of extensions: 131994
Number of successful extensions: 190
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 5
Length of query: 128
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 39
Effective length of database: 12,388,755
Effective search space: 483161445
Effective search space used: 483161445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 150 (62.4 bits)