Os06g0134000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S20.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0134000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 40S ribosomal protein S20.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.23 | 0.312 | 12.3 | -0.0983 | 0.623 | 0.471 | 0.391 | -1.37 | -0.283 | 17 | 19.83 | 2745 | -- | -- |
| 46.57 | 0.318 | 12.3 | 0.0873 | 0.624 | 0.819 | 0.401 | -- | -0.249 | 16.8 | 18.9 | 2700 | -- | -- |
| 44.61 | 0.311 | 12.3 | -0.104 | 0.627 | 0.468 | -- | -1.4 | -0.283 | 17 | 19.87 | 2726 | -- | -- |
| 47.01 | 0.319 | 12.3 | 0.0878 | 0.629 | 0.817 | -- | -- | -0.228 | 16.9 | 18.7 | 2696 | -- | -- |
| 64.95 | 0.375 | 12.3 | -0.0819 | -- | 0.432 | -- | -1.41 | -0.28 | -- | 19.6 | 2925 | -- | -- |
| 56.92 | 0.354 | 12.2 | 0.498 | 0.594 | -- | 0.596 | -- | -0.0617 | 17.1 | -- | -- | -- | -- |
| 57.81 | 0.356 | 12.2 | 0.498 | 0.598 | -- | -- | -- | -0.0588 | 17.1 | -- | -- | -- | -- |
| 67.02 | 0.381 | 12.3 | 0.121 | -- | 0.765 | -- | -- | -0.234 | -- | 18.9 | 3243 | -- | -- |
| 47.11 | 0.32 | 12.3 | -- | 0.627 | 0.901 | -- | -- | -0.235 | 17 | 18.7 | 2734 | -- | -- |
| 76.57 | 0.409 | 12.2 | 0.477 | -- | -- | -- | -- | -0.074 | -- | -- | -- | -- | -- |
| 64.35 | 0.375 | 12.2 | -- | 0.59 | -- | -- | -- | -0.114 | 17.2 | -- | -- | -- | -- |
| 67 | 0.381 | 12.3 | -- | -- | 0.859 | -- | -- | -0.259 | -- | 18.9 | 3277 | -- | -- |
| 82.56 | 0.424 | 12.2 | -- | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.09 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 2 | 44.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 3 | 44.11 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 7 | 44.15 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 71 | 44.72 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 80 | 44.76 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 128 | 45.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 133 | 45.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 174 | 45.27 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 325 | 45.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 22 |
| 327 | 45.66 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 2 |
| 338 | 45.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 339 | 45.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 358 | 45.71 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 21 |
| 361 | 45.71 | temperature | 15 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 389 | 45.73 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 21 |
| 465 | 45.78 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 467 | 45.78 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 481 | 45.78 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 488 | 45.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 535 | 45.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 546 | 45.86 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 567 | 45.89 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 684 | 46.02 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 821 | 46.14 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 888 | 46.21 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 2 |