BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0134000 Os06g0134000|AK106717
(128 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62300.1 | chr5:25021388-25022235 REVERSE LENGTH=125 198 5e-52
AT3G45030.1 | chr3:16471606-16472312 REVERSE LENGTH=125 198 5e-52
AT3G47370.2 | chr3:17453671-17454437 REVERSE LENGTH=123 196 2e-51
AT3G13120.1 | chr3:4220310-4221526 REVERSE LENGTH=192 53 4e-08
>AT5G62300.1 | chr5:25021388-25022235 REVERSE LENGTH=125
Length = 124
Score = 198 bits (504), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/121 (81%), Positives = 106/121 (87%), Gaps = 1/121 (0%)
Query: 7 AYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66
AY P MK GK G E E H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMP
Sbjct: 4 AYQP-MKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 62
Query: 67 TKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTIS 126
TKVL ITTRK+PCGEGTNTWDRFE+RVHKRVIDL SS DVVKQITSITIEPGVEVEVTI+
Sbjct: 63 TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 122
Query: 127 D 127
D
Sbjct: 123 D 123
>AT3G45030.1 | chr3:16471606-16472312 REVERSE LENGTH=125
Length = 124
Score = 198 bits (504), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/121 (81%), Positives = 106/121 (87%), Gaps = 1/121 (0%)
Query: 7 AYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66
AY P MK GK G E E H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMP
Sbjct: 4 AYQP-MKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 62
Query: 67 TKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTIS 126
TKVL ITTRK+PCGEGTNTWDRFE+RVHKRVIDL SS DVVKQITSITIEPGVEVEVTI+
Sbjct: 63 TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 122
Query: 127 D 127
D
Sbjct: 123 D 123
>AT3G47370.2 | chr3:17453671-17454437 REVERSE LENGTH=123
Length = 122
Score = 196 bits (499), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/122 (80%), Positives = 107/122 (87%), Gaps = 1/122 (0%)
Query: 6 VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65
+AY P MK K G E+ E H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 1 MAYEP-MKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRM 59
Query: 66 PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125
PTKVL ITTRK+PCGEGTNTWDRFE+RVHKRVIDL SS DVVKQITSITIEPGVEVEVTI
Sbjct: 60 PTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 119
Query: 126 SD 127
+D
Sbjct: 120 AD 121
>AT3G13120.1 | chr3:4220310-4221526 REVERSE LENGTH=192
Length = 191
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 26 QHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNT 85
+ +IRI L S V +E C ++ A++ + K GPV +PTK KSP
Sbjct: 92 KQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 151
Query: 86 WDRFEMRVHKRVID-LVSSADVVKQITSITIEPGVEVEVTI 125
+ FE+R H+R+ID L +A + + + + GV+VEV +
Sbjct: 152 F-HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.130 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,466,448
Number of extensions: 86874
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 4
Length of query: 128
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 41
Effective length of database: 8,721,377
Effective search space: 357576457
Effective search space used: 357576457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 105 (45.1 bits)