BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0133400 Os06g0133400|009-145-C03
         (91 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0133400  Conserved hypothetical protein                      159   4e-40
Os06g0133500  Conserved hypothetical protein                       75   1e-14

>Os06g0133400 Conserved hypothetical protein
          Length = 91

 Score =  159 bits (403), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/91 (86%), Positives = 79/91 (86%)

Query: 1  MDKILAFSILSSSPAEIAAPGYYTRFSWRTTSXXXXXXXXXXXXPTRQQEGEKQQAGRSS 60
          MDKILAFSILSSSPAEIAAPGYYTRFSWRTTS            PTRQQEGEKQQAGRSS
Sbjct: 1  MDKILAFSILSSSPAEIAAPGYYTRFSWRTTSAGKQQKAAAEKAPTRQQEGEKQQAGRSS 60

Query: 61 PAAAAERKPVARPRFAPEFDGINCFETIVPF 91
          PAAAAERKPVARPRFAPEFDGINCFETIVPF
Sbjct: 61 PAAAAERKPVARPRFAPEFDGINCFETIVPF 91



>Os06g0133500 Conserved hypothetical protein
          Length = 90

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 57/95 (60%), Gaps = 13/95 (13%)

Query: 1  MDKILAFSILSSSPAEIAAPGYYTRFSWRTTSXXXXXXXXXXXXPTRQQEGEKQQAGR-S 59
          MDK+LAFSILS+SPA+IAA GY+ R SWR  +              R+Q  E+QQ G  S
Sbjct: 1  MDKVLAFSILSASPADIAAGGYWARLSWRRKA-------DDQAVDGRRQPSEQQQRGEGS 53

Query: 60 SPA-----AAAERKPVARPRFAPEFDGINCFETIV 89
          SP+           P   PRFAPEFDGI+CFETIV
Sbjct: 54 SPSQREERRRPREAPPLPPRFAPEFDGIDCFETIV 88



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.130    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,027,531
Number of extensions: 98745
Number of successful extensions: 442
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 2
Length of query: 91
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 30
Effective length of database: 13,850,747
Effective search space: 415522410
Effective search space used: 415522410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)