BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0130800 Os06g0130800|AK069863
(240 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0130800 Histone H5 family protein 155 2e-38
Os04g0253000 Similar to Histone H1 97 1e-20
Os03g0799000 Similar to Histone H1 75 6e-14
Os07g0184800 Similar to Variant of histone H1 67 1e-11
>Os06g0130800 Histone H5 family protein
Length = 240
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 79 HHPPYFEMIKEAIMALDGNGKAGSSPYAIAKYMGEQHMGVLPANYRKVLAVQLRNFAAKG 138
HHPPYFEMIKEAIMALDGNGKAGSSPYAIAKYMGEQHMGVLPANYRKVLAVQLRNFAAKG
Sbjct: 79 HHPPYFEMIKEAIMALDGNGKAGSSPYAIAKYMGEQHMGVLPANYRKVLAVQLRNFAAKG 138
Query: 139 RLVKVKASFKL 149
RLVKVKASFKL
Sbjct: 139 RLVKVKASFKL 149
>Os04g0253000 Similar to Histone H1
Length = 191
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 2/70 (2%)
Query: 80 HPPYFEMIKEAIMALDGNGKAGSSPYAIAKYMGEQHMGVLPANYRKVLAVQLRNFAAKGR 139
HPPYFEMIKEAI L + GSS +AIAKYM E+H LPANY+K+L++QLR FA+KG+
Sbjct: 34 HPPYFEMIKEAITVL--KERTGSSAHAIAKYMEEKHGASLPANYKKMLSIQLRGFASKGK 91
Query: 140 LVKVKASFKL 149
LVKVKAS+KL
Sbjct: 92 LVKVKASYKL 101
>Os03g0799000 Similar to Histone H1
Length = 293
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 80 HPPYFEMIKEAIMALDGNGKAGSSPYAIAKYMGEQHMGVLPANYRKVLAVQLRNFAAKGR 139
HPPY EMI EAI L + GSS YAI K++ ++H LP+N+RK L VQ++ A G+
Sbjct: 54 HPPYAEMISEAIATL--KERTGSSQYAIGKFLEDKHKDHLPSNFRKQLLVQIKKLVAAGK 111
Query: 140 LVKVKASFKL 149
L KVK S+KL
Sbjct: 112 LTKVKNSYKL 121
>Os07g0184800 Similar to Variant of histone H1
Length = 278
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 80 HPPYFEMIKEAIMALDGNGKAGSSPYAIAKYMGEQHMGVLPANYRKVLAVQLRNFAAKGR 139
HPPY EMI EAI+AL + GSS AI K++ H LP N+RK+L+ L+ A G+
Sbjct: 76 HPPYAEMIMEAIVALKE--RTGSSSQAIGKHIHANHGANLPPNFRKLLSGNLKKLTAAGK 133
Query: 140 LVKVKASFKL 149
L KVK SFKL
Sbjct: 134 LAKVKNSFKL 143
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,377,836
Number of extensions: 71323
Number of successful extensions: 193
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 4
Length of query: 240
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 142
Effective length of database: 11,918,829
Effective search space: 1692473718
Effective search space used: 1692473718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)