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Os06g0130800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Histone H5 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 16.2 (0.0251) R2 : 0.578
β1 : 1.63 (0.0918) R2dD : 0.305 R2D : 0.167
β2 : 0.919 (0.065) R2dC : 0.186 R2C : 0.117
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.756 (0.0535) R2dN8 : 0.248 R2N8 : 0.0913
σ : 0.471
deviance : 101.33
__
_____
C
peak time of C : 19
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.05 0.431 16.2 1.34 1.02 -2.12 -0.474 2.23 0.642 3.81 0.2905 677 -- --
85.91 0.432 16.2 1.42 1.24 -2.37 1.18 -- 0.675 4.14 0.349 669 -- --
84.17 0.427 16.2 1.37 1.05 -2.13 -- 1.69 0.645 3.79 0.3 669 -- --
89.31 0.44 16.2 1.43 1.19 -2.23 -- -- 0.668 3.83 0.3 658 -- --
89.52 0.441 16.2 1.45 -- -1.34 -- 1.51 0.693 -- 0.48 867 -- --
97.79 0.464 16.2 1.61 0.923 -- -1.18 -- 0.76 18.9 -- -- -- --
101.33 0.471 16.2 1.63 0.919 -- -- -- 0.756 19 -- -- -- --
95 0.454 16.2 1.47 -- -1.45 -- -- 0.679 -- 0.4268 924 -- --
135.87 0.543 16.2 -- 2.28 -3.67 -- -- 0.444 4.97 0.0004463 702 -- --
145.76 0.564 16.2 1.62 -- -- -- -- 0.739 -- -- -- -- --
171.77 0.613 16.2 -- 0.902 -- -- -- 0.574 19.1 -- -- -- --
144.06 0.559 16.2 -- -- -1.77 -- -- 0.48 -- 0.009999 2346 -- --
214.68 0.684 16.2 -- -- -- -- -- 0.56 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.68 atmosphere 995.0 270 > th dose dependent rect. 1 4
2 70.04 temperature 15.0 10 > th dose independent rect. 7 19
5 70.55 atmosphere 995.0 270 > th dose dependent rect. 24 6
7 70.88 wind 1.0 270 > th dose independent rect. 1 4
8 70.95 temperature 30.0 270 < th dose dependent rect. 1 4
10 71.10 temperature 30.0 90 < th dose dependent rect. 3 4
11 71.15 temperature 15.0 270 > th dose independent rect. 5 20
15 71.56 temperature 15.0 270 > th dose independent rect. 6 18
24 72.27 atmosphere 1000.0 270 > th dose independent rect. 1 4
26 72.60 wind 7.0 270 < th dose independent rect. 1 4
27 72.60 precipitation 0.1 270 < th dose independent rect. 5 20
28 72.60 precipitation 0.1 270 < th dose dependent rect. 5 20
29 72.65 temperature 15.0 270 > th dose independent rect. 17 8
32 72.69 wind 9.0 270 < th dose independent rect. 5 20
34 72.72 temperature 10.0 270 > th dose dependent rect. 19 15
35 72.80 radiation 1.0 270 < th dose dependent rect. 1 5
37 72.89 temperature 10.0 270 > th dose dependent rect. 18 7
41 72.99 temperature 10.0 270 > th dose independent rect. 1 4
43 72.99 temperature 30.0 270 < th dose independent rect. 1 4
44 72.99 humidity 50.0 270 > th dose independent rect. 1 4
48 72.99 atmosphere 1010.0 270 < th dose independent rect. 1 4
50 72.99 radiation 20.0 270 < th dose independent rect. 1 4
54 73.00 radiation 40.0 270 < th dose dependent rect. 1 4
55 73.01 radiation 20.0 270 < th dose dependent rect. 1 4
58 73.03 temperature 10.0 10 > th dose dependent rect. 7 19
60 73.07 radiation 1.0 270 < th dose independent rect. 1 4
64 73.09 wind 1.0 270 > th dose independent rect. 24 6
68 73.24 precipitation 0.1 270 < th dose independent rect. 1 4
69 73.24 precipitation 0.1 270 < th dose dependent rect. 1 4
71 73.40 temperature 10.0 90 > th dose dependent rect. 6 21
74 73.44 atmosphere 995.0 270 > th dose independent rect. 5 20
86 73.76 atmosphere 995.0 10 > th dose dependent rect. 3 4
87 73.77 atmosphere 1000.0 90 > th dose independent rect. 3 3
92 73.87 humidity 50.0 90 > th dose independent rect. 6 21
95 73.98 wind 5.0 90 < th dose independent rect. 3 3
109 74.21 precipitation 0.1 90 < th dose independent rect. 3 3
110 74.21 temperature 30.0 10 < th dose dependent rect. 4 3
111 74.21 precipitation 0.1 90 < th dose dependent rect. 3 3
115 74.23 temperature 10.0 90 > th dose independent rect. 3 3
117 74.23 temperature 30.0 90 < th dose independent rect. 3 3
118 74.23 humidity 50.0 90 > th dose independent rect. 3 3
122 74.23 atmosphere 1010.0 90 < th dose independent rect. 3 3
124 74.23 radiation 20.0 90 < th dose independent rect. 3 3
132 74.31 atmosphere 1000.0 10 > th dose independent rect. 2 5
139 74.37 atmosphere 995.0 10 > th dose independent rect. 7 19
146 74.46 humidity 50.0 10 > th dose independent rect. 7 19
149 74.49 precipitation 0.1 10 < th dose independent rect. 7 19
150 74.49 precipitation 0.1 10 < th dose dependent rect. 7 19
154 74.54 radiation 40.0 90 < th dose dependent rect. 3 3
159 74.61 wind 7.0 10 < th dose independent rect. 2 5
180 74.68 wind 9.0 10 < th dose independent rect. 7 19
226 74.88 temperature 10.0 10 > th dose independent rect. 2 5
228 74.88 temperature 30.0 10 < th dose independent rect. 2 5
229 74.88 humidity 50.0 10 > th dose independent rect. 2 5
233 74.88 atmosphere 1015.0 10 < th dose independent rect. 2 5
234 74.88 radiation 20.0 10 < th dose independent rect. 2 5
260 75.00 precipitation 0.1 10 < th dose independent rect. 2 5
262 75.00 precipitation 0.1 10 < th dose dependent rect. 2 5
266 75.04 radiation 1.0 270 < th dose dependent rect. 1 8
270 75.07 wind 9.0 1440 < th dose independent rect. 4 4
271 75.07 temperature 10.0 1440 > th dose independent rect. 4 4
274 75.07 temperature 30.0 1440 < th dose independent rect. 4 4
278 75.07 humidity 50.0 1440 > th dose independent rect. 4 4
283 75.07 atmosphere 995.0 1440 > th dose independent rect. 4 4
284 75.07 atmosphere 1015.0 1440 < th dose independent rect. 4 4
286 75.07 temperature 10.0 1440 > th dose independent rect. 8 20
344 75.21 radiation 1.0 10 > th dose independent rect. 7 9
352 75.25 humidity 50.0 270 > th dose dependent rect. 1 4
354 75.26 radiation 40.0 10 < th dose dependent rect. 14 17
377 75.34 wind 1.0 30 > th dose independent rect. 2 5
378 75.36 radiation 1.0 270 < th dose dependent rect. 1 13
396 75.38 atmosphere 995.0 90 > th dose independent rect. 6 9
406 75.40 atmosphere 1010.0 10 < th dose independent rect. 7 19
424 75.46 wind 9.0 270 < th dose dependent rect. 1 4
426 75.48 precipitation 0.1 90 < th dose independent rect. 6 9
428 75.48 precipitation 0.1 90 < th dose dependent rect. 6 9
438 75.52 radiation 1.0 270 < th dose dependent rect. 1 17
440 75.55 temperature 10.0 90 > th dose independent rect. 6 9
441 75.55 atmosphere 1015.0 90 < th dose independent rect. 6 9
442 75.55 temperature 10.0 90 > th dose independent rect. 15 15
444 75.56 humidity 50.0 10 > th dose independent rect. 7 8
451 75.58 radiation 40.0 90 < th dose independent rect. 15 15
458 75.68 humidity 50.0 90 > th dose independent rect. 6 9
459 75.68 wind 9.0 90 < th dose dependent rect. 3 3
481 75.75 wind 9.0 90 < th dose independent rect. 6 9
506 75.81 humidity 50.0 90 > th dose dependent rect. 3 3
514 75.88 radiation 40.0 10 < th dose dependent rect. 3 4
517 75.91 temperature 15.0 270 > th dose independent rect. 19 15
520 75.94 wind 1.0 270 > th dose independent rect. 13 16
535 76.06 radiation 40.0 90 < th dose independent rect. 13 17
547 76.11 temperature 10.0 270 > th dose independent rect. 13 16
615 76.24 precipitation 0.1 270 < th dose independent rect. 17 8
616 76.24 precipitation 0.1 270 < th dose dependent rect. 17 8
644 76.40 radiation 10.0 270 < th dose independent rect. 17 8
671 76.47 wind 1.0 90 > th dose independent rect. 6 21
681 76.51 radiation 1.0 270 < th dose independent rect. 1 8
742 76.62 wind 9.0 270 < th dose independent rect. 17 8
748 76.64 precipitation 0.1 90 < th dose independent rect. 15 15
749 76.64 radiation 40.0 10 < th dose independent rect. 15 16
751 76.64 precipitation 0.1 90 < th dose dependent rect. 15 15
754 76.66 precipitation 0.1 10 < th dose independent rect. 7 8
755 76.66 precipitation 0.1 10 < th dose dependent rect. 7 8
769 76.72 temperature 10.0 270 > th dose independent rect. 1 16
770 76.72 atmosphere 1015.0 270 < th dose independent rect. 1 16
771 76.72 radiation 1.0 270 < th dose independent rect. 1 17
786 76.74 wind 9.0 90 < th dose independent rect. 15 15
790 76.75 radiation 1.0 270 < th dose independent rect. 1 13
797 76.76 temperature 10.0 10 > th dose independent rect. 7 8
799 76.76 atmosphere 995.0 10 > th dose independent rect. 7 8
800 76.76 atmosphere 1015.0 10 < th dose independent rect. 7 8
801 76.76 temperature 10.0 10 > th dose independent rect. 15 16
832 76.88 radiation 40.0 270 < th dose dependent rect. 17 8
844 76.93 humidity 50.0 270 > th dose independent rect. 17 8
863 76.97 wind 9.0 10 < th dose dependent rect. 3 4
874 77.01 wind 9.0 270 < th dose independent rect. 13 16
881 77.04 radiation 1.0 270 < th dose dependent sin 5 NA
888 77.08 atmosphere 995.0 270 > th dose independent rect. 17 8
893 77.09 precipitation 0.1 270 < th dose independent rect. 13 16
894 77.09 precipitation 0.1 270 < th dose dependent rect. 13 16
901 77.13 radiation 40.0 270 < th dose independent rect. 6 19
905 77.14 wind 9.0 10 < th dose independent rect. 7 8
921 77.18 precipitation 0.1 270 < th dose independent rect. 1 16
924 77.18 precipitation 0.1 270 < th dose dependent rect. 1 16
931 77.21 atmosphere 1015.0 270 < th dose independent rect. 5 20
936 77.22 wind 1.0 270 > th dose independent rect. 6 18
977 77.31 atmosphere 995.0 90 > th dose independent rect. 15 15