BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0130800 Os06g0130800|AK069863
         (240 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18050.1  | chr2:7846095-7846670 FORWARD LENGTH=168             93   1e-19
AT2G30620.1  | chr2:13045360-13046267 FORWARD LENGTH=274           68   4e-12
AT1G06760.1  | chr1:2076687-2077616 REVERSE LENGTH=275             54   5e-08

>AT2G18050.1 | chr2:7846095-7846670 FORWARD LENGTH=168
          Length = 167

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 56/70 (80%), Gaps = 2/70 (2%)

Query: 80  HPPYFEMIKEAIMALDGNGKAGSSPYAIAKYMGEQHMGVLPANYRKVLAVQLRNFAAKGR 139
           HPPYF+MIKEA+M L    K GSSPYAIAK + E+H  +LP ++RK L++QL+N  AKG+
Sbjct: 24  HPPYFQMIKEALMVL--KEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGK 81

Query: 140 LVKVKASFKL 149
           LVK++AS+KL
Sbjct: 82  LVKIRASYKL 91



>AT2G30620.1 | chr2:13045360-13046267 FORWARD LENGTH=274
          Length = 273

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 79  HHPPYFEMIKEAIMALDGNGKAGSSPYAIAKYMGEQHMGVLPANYRKVLAVQLRNFAAKG 138
            HP Y EMIK+AI+ L    + GSS YAI K++ E+H   LP  +RK+L V L+   A  
Sbjct: 61  SHPTYEEMIKDAIVTL--KERTGSSQYAIQKFIEEKHKS-LPPTFRKLLLVNLKRLVASE 117

Query: 139 RLVKVKASFKL 149
           +LVKVKASFK+
Sbjct: 118 KLVKVKASFKI 128



>AT1G06760.1 | chr1:2076687-2077616 REVERSE LENGTH=275
          Length = 274

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 79  HHPPYFEMIKEAIMALDGNGKAGSSPYAIAKYMGEQHMGVLPANYRKVLAVQLRNFAAKG 138
            HP Y EMIK+AI+ L    + GSS YAI K++ E+    LP  +RK+L + L+   A G
Sbjct: 61  SHPTYEEMIKDAIVTL--KERTGSSQYAIQKFIEEKRKE-LPPTFRKLLLLNLKRLVASG 117

Query: 139 RLVKVKASFKL 149
           +LVKVKASFKL
Sbjct: 118 KLVKVKASFKL 128



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,440,859
Number of extensions: 42243
Number of successful extensions: 100
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 3
Length of query: 240
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 144
Effective length of database: 8,474,633
Effective search space: 1220347152
Effective search space used: 1220347152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)