FiT-DB / Search/ Help/ Sample detail

Os04g0253000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histone H1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 17.2 (0.0244) R2 : 0.572
β1 : 1.68 (0.0893) R2dD : 0.344 R2D : 0.262
β2 : 0.871 (0.0596) R2dC : 0.201 R2C : 0.175
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.511 (0.0521) R2dN8 : 0.121 R2N8 : 0.0234
σ : 0.459
deviance : 95.97
__
_____
C
peak time of C : 21.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.16 0.431 17.3 1.12 0.913 0.557 -1.28 -4.42 0.364 22.1 25.27 12 -- --
91.48 0.449 17.2 1.62 0.882 0.145 -1.03 -- 0.501 21.7 25.27 12 -- --
90.19 0.442 17.2 1.25 0.914 0.534 -- -3.76 0.392 22.1 25.42 22 -- --
95.26 0.458 17.2 1.65 0.892 0.215 -- -- 0.495 22 25.1 12 -- --
118.39 0.507 17.3 0.541 -- 0.911 -- -4.52 0.26 -- 22.79 746 -- --
91.82 0.449 17.2 1.64 0.869 -- -1.07 -- 0.511 21.5 -- -- -- --
95.97 0.459 17.2 1.68 0.871 -- -- -- 0.511 21.6 -- -- -- --
126.54 0.524 17.2 1.44 -- 0.857 -- -- 0.341 -- 16.5 785 -- --
161.29 0.591 17.3 -- 1 0.747 -- -- 0.216 22.8 20.8 13 -- --
140.9 0.555 17.2 1.69 -- -- -- -- 0.51 -- -- -- -- --
170.4 0.611 17.2 -- 0.875 -- -- -- 0.324 21.8 -- -- -- --
148.12 0.567 17.3 -- -- 1.31 -- -- -0.0794 -- 12.2 46914 -- --
216.04 0.686 17.2 -- -- -- -- -- 0.323 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.38 humidity 50.0 30 > th dose dependent rect. 7 6
2 76.85 radiation 40.0 90 < th dose independent rect. 7 6
5 77.07 humidity 60.0 90 > th dose independent rect. 7 18
9 77.65 radiation 1.0 1440 < th dose independent rect. 19 10
10 77.65 radiation 40.0 4320 < th dose dependent rect. 19 10
13 77.81 radiation 40.0 10 < th dose independent rect. 7 5
17 77.96 radiation 20.0 270 < th dose independent rect. 7 1
18 77.98 humidity 60.0 30 > th dose independent rect. 7 6
21 78.03 radiation 40.0 10 < th dose independent rect. 7 19
58 79.05 radiation 30.0 270 < th dose dependent rect. 7 1
61 79.14 humidity 50.0 90 > th dose dependent rect. 7 18
77 79.45 humidity 70.0 270 > th dose dependent rect. 7 1
80 79.52 radiation 40.0 90 < th dose dependent rect. 7 6
81 79.53 temperature 25.0 720 > th dose independent rect. 7 1
87 79.58 radiation 1.0 1440 < th dose independent rect. 24 5
89 79.60 radiation 40.0 10 < th dose independent rect. 7 8
96 79.67 temperature 25.0 720 > th dose independent rect. 6 4
136 80.01 radiation 1.0 14400 > th dose independent rect. 8 5
141 80.06 radiation 40.0 43200 < th dose independent rect. 16 9
142 80.07 radiation 1.0 1440 > th dose independent rect. 8 4
153 80.12 radiation 1.0 14400 < th dose independent rect. 8 5
158 80.13 wind 1.0 30 > th dose independent rect. 7 19
159 80.13 wind 9.0 10 < th dose independent rect. 7 19
160 80.15 humidity 80.0 270 > th dose dependent rect. 6 3
165 80.21 atmosphere 1000.0 10 > th dose independent rect. 7 19
182 80.29 atmosphere 1000.0 10 > th dose independent rect. 2 5
186 80.31 precipitation 0.1 10 < th dose independent rect. 7 19
188 80.31 precipitation 0.1 10 < th dose dependent rect. 7 19
191 80.34 wind 9.0 10 < th dose independent rect. 2 5
192 80.34 temperature 10.0 10 > th dose independent rect. 2 5
194 80.34 temperature 30.0 10 < th dose independent rect. 2 5
195 80.34 humidity 50.0 10 > th dose independent rect. 2 5
199 80.34 atmosphere 1015.0 10 < th dose independent rect. 2 5
200 80.34 radiation 20.0 10 < th dose independent rect. 2 5
203 80.34 temperature 10.0 10 > th dose independent rect. 7 19
207 80.38 radiation 20.0 270 < th dose independent rect. 6 3
208 80.38 radiation 20.0 4320 < th dose dependent rect. 24 5
212 80.40 atmosphere 995.0 10 > th dose dependent rect. 2 5
244 80.50 precipitation 0.1 10 < th dose independent rect. 2 5
246 80.50 temperature 20.0 270 > th dose dependent rect. 6 4
247 80.50 precipitation 0.1 10 < th dose dependent rect. 2 5
257 80.55 wind 1.0 30 > th dose independent rect. 7 21
258 80.56 wind 9.0 1440 < th dose independent rect. 3 5
259 80.56 temperature 10.0 1440 > th dose independent rect. 3 5
262 80.56 temperature 30.0 1440 < th dose independent rect. 3 5
266 80.56 humidity 50.0 1440 > th dose independent rect. 3 5
271 80.56 atmosphere 995.0 1440 > th dose independent rect. 3 5
273 80.56 temperature 10.0 1440 > th dose independent rect. 8 19
278 80.57 temperature 10.0 10 > th dose dependent rect. 2 5
294 80.65 wind 1.0 30 > th dose independent rect. 2 5
299 80.70 radiation 40.0 43200 < th dose independent rect. 16 3
307 80.74 radiation 1.0 14400 < th dose independent rect. 8 2
310 80.75 atmosphere 995.0 270 > th dose dependent rect. 2 1
314 80.77 radiation 40.0 10 < th dose dependent rect. 2 5
329 80.82 wind 9.0 270 < th dose independent rect. 3 23
347 80.89 temperature 25.0 720 > th dose dependent rect. 7 1
348 80.89 radiation 1.0 14400 < th dose dependent rect. 8 5
350 80.89 radiation 40.0 90 < th dose dependent rect. 13 17
357 80.92 humidity 50.0 30 > th dose dependent rect. 2 5
359 80.92 radiation 1.0 10 < th dose dependent rect. 4 10
369 80.97 radiation 10.0 1440 < th dose independent rect. 4 2
370 80.97 radiation 1.0 14400 < th dose dependent rect. 9 1
407 81.12 radiation 30.0 43200 > th dose independent rect. 7 1
431 81.18 wind 1.0 30 > th dose independent rect. 4 3
441 81.21 wind 9.0 270 < th dose independent rect. 4 21
444 81.23 atmosphere 995.0 270 > th dose dependent rect. 1 4
462 81.31 wind 9.0 30 < th dose dependent rect. 2 5
488 81.42 atmosphere 1000.0 270 > th dose independent rect. 2 1
495 81.44 wind 1.0 270 > th dose independent rect. 2 1
497 81.45 temperature 15.0 43200 < th dose independent rect. 21 1
502 81.45 radiation 40.0 270 < th dose dependent rect. 5 6
503 81.46 humidity 50.0 10 > th dose independent rect. 7 10
505 81.46 atmosphere 995.0 270 > th dose independent rect. 3 23
508 81.47 wind 9.0 270 < th dose independent rect. 2 1
509 81.47 temperature 10.0 270 > th dose independent rect. 2 1
511 81.47 temperature 30.0 270 < th dose independent rect. 2 1
512 81.47 humidity 50.0 270 > th dose independent rect. 2 1
516 81.47 atmosphere 1010.0 270 < th dose independent rect. 2 1
518 81.47 radiation 1.0 270 < th dose independent rect. 2 1
523 81.47 temperature 10.0 270 > th dose independent rect. 3 23
524 81.47 radiation 1.0 270 < th dose dependent rect. 2 1
550 81.52 temperature 15.0 43200 < th dose independent rect. 18 5
554 81.53 precipitation 0.1 270 < th dose independent rect. 2 1
555 81.53 precipitation 0.1 270 < th dose dependent rect. 2 1
562 81.54 humidity 50.0 270 > th dose dependent rect. 2 1
575 81.57 radiation 1.0 10 > th dose independent rect. 7 8
580 81.59 wind 1.0 43200 < th dose independent rect. 20 4
584 81.60 temperature 15.0 43200 > th dose independent rect. 18 5
588 81.61 temperature 15.0 43200 > th dose independent rect. 21 1
596 81.63 temperature 15.0 43200 > th dose independent rect. 19 1
597 81.63 temperature 15.0 43200 < th dose independent rect. 18 1
639 81.71 temperature 10.0 270 > th dose dependent rect. 5 6
669 81.77 wind 1.0 43200 > th dose independent rect. 19 2
670 81.77 radiation 1.0 1440 < th dose independent rect. 8 3
672 81.77 radiation 1.0 1440 < th dose dependent rect. 8 3
681 81.80 radiation 1.0 10 > th dose independent rect. 7 10
690 81.81 temperature 10.0 270 > th dose dependent rect. 2 1
693 81.82 wind 9.0 4320 < th dose independent rect. 5 3
701 81.83 radiation 20.0 90 < th dose independent rect. 13 17
712 81.86 radiation 1.0 10 < th dose dependent rect. 4 2
723 81.87 radiation 1.0 1440 > th dose dependent rect. 4 2
735 81.88 wind 7.0 270 < th dose independent rect. 1 3
736 81.88 atmosphere 1000.0 270 > th dose independent rect. 1 3
744 81.89 atmosphere 995.0 270 > th dose independent rect. 4 21
764 81.91 humidity 50.0 270 > th dose dependent rect. 1 3
770 81.92 radiation 1.0 10 < th dose dependent sin 2 NA
780 81.93 wind 1.0 43200 < th dose dependent rect. 20 4
783 81.94 temperature 10.0 270 > th dose independent rect. 1 3
785 81.94 temperature 30.0 270 < th dose independent rect. 1 3
786 81.94 humidity 50.0 270 > th dose independent rect. 1 3
790 81.94 atmosphere 1010.0 270 < th dose independent rect. 1 3
792 81.94 radiation 1.0 270 < th dose independent rect. 1 3
801 81.94 temperature 10.0 270 > th dose independent rect. 4 21
802 81.94 radiation 1.0 270 < th dose dependent rect. 1 3
822 81.96 precipitation 0.1 270 < th dose independent rect. 1 3
824 81.96 precipitation 0.1 270 < th dose dependent rect. 1 3
831 81.97 temperature 10.0 270 > th dose dependent rect. 1 3
882 82.02 precipitation 0.1 270 < th dose independent rect. 3 23
886 82.02 precipitation 0.1 270 < th dose dependent rect. 3 23
903 82.04 temperature 15.0 43200 > th dose independent rect. 10 14
916 82.05 atmosphere 1015.0 270 < th dose dependent rect. 7 1
925 82.06 radiation 40.0 43200 > th dose independent rect. 15 18
937 82.07 radiation 10.0 43200 < th dose dependent rect. 18 16
948 82.08 radiation 10.0 43200 < th dose dependent rect. 18 14
951 82.09 radiation 1.0 10 > th dose independent sin 2 NA
959 82.10 radiation 1.0 10 < th dose independent sin 2 NA
960 82.10 radiation 1.0 43200 > th dose independent rect. 4 1
975 82.10 radiation 1.0 43200 > th dose dependent rect. 4 1
985 82.11 temperature 15.0 43200 < th dose independent sin 18 NA
994 82.11 precipitation 0.1 270 < th dose independent rect. 4 21
999 82.11 precipitation 0.1 270 < th dose dependent rect. 4 21