BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0253000 Os04g0253000|AK073668
         (191 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18050.1  | chr2:7846095-7846670 FORWARD LENGTH=168             88   2e-18
AT2G30620.1  | chr2:13045360-13046267 FORWARD LENGTH=274           75   3e-14
AT1G06760.1  | chr1:2076687-2077616 REVERSE LENGTH=275             63   1e-10
AT1G49950.3  | chr1:18494439-18496713 REVERSE LENGTH=301           50   7e-07
AT1G54260.1  | chr1:20257340-20259176 FORWARD LENGTH=198           47   6e-06

>AT2G18050.1 | chr2:7846095-7846670 FORWARD LENGTH=168
          Length = 167

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 55/66 (83%)

Query: 37  YFEMIKEAITVLKERTGSSAHAIAKYMEEKHGASLPANYKKMLSIQLRGFASKGKLVKVK 96
           YF+MIKEA+ VLKE+ GSS +AIAK +EEKH + LP +++K LS+QL+   +KGKLVK++
Sbjct: 27  YFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIR 86

Query: 97  ASYKLS 102
           ASYKLS
Sbjct: 87  ASYKLS 92



>AT2G30620.1 | chr2:13045360-13046267 FORWARD LENGTH=274
          Length = 273

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 37  YFEMIKEAITVLKERTGSSAHAIAKYMEEKHGASLPANYKKMLSIQLRGFASKGKLVKVK 96
           Y EMIK+AI  LKERTGSS +AI K++EEKH  SLP  ++K+L + L+   +  KLVKVK
Sbjct: 65  YEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK-SLPPTFRKLLLVNLKRLVASEKLVKVK 123

Query: 97  ASYKL 101
           AS+K+
Sbjct: 124 ASFKI 128



>AT1G06760.1 | chr1:2076687-2077616 REVERSE LENGTH=275
          Length = 274

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 48/65 (73%), Gaps = 1/65 (1%)

Query: 37  YFEMIKEAITVLKERTGSSAHAIAKYMEEKHGASLPANYKKMLSIQLRGFASKGKLVKVK 96
           Y EMIK+AI  LKERTGSS +AI K++EEK    LP  ++K+L + L+   + GKLVKVK
Sbjct: 65  YEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKRLVASGKLVKVK 123

Query: 97  ASYKL 101
           AS+KL
Sbjct: 124 ASFKL 128



>AT1G49950.3 | chr1:18494439-18496713 REVERSE LENGTH=301
          Length = 300

 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 40  MIKEAITVLKERTGSSAHAIAKYMEEKHGASLPANYKKMLSIQLRGFASKGKLVKVKASY 99
           +I EAI  LKE  G +   I  Y+E+++ A  P ++K++LS +L+   S GKLVKVK  Y
Sbjct: 124 LIMEAIATLKEPGGCNKTTIGAYIEDQYHA--PPDFKRLLSTKLKYLTSCGKLVKVKRKY 181

Query: 100 KL 101
           ++
Sbjct: 182 RI 183



>AT1G54260.1 | chr1:20257340-20259176 FORWARD LENGTH=198
          Length = 197

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 37  YFEMIKEAITVLKERTGSSAHAIAKYMEEKHGASLPANYKKMLSIQLRGFASKGKLVKVK 96
           Y  M+ EA++ + +  GS+   I +++E +H   +P N+KK+LS  L    S+ KL KV+
Sbjct: 7   YDAMVFEAVSTINDENGSNLKEILRFIEGQH--EVPQNFKKLLSYSLGILVSQDKLKKVR 64

Query: 97  ASYKLS 102
             YK+S
Sbjct: 65  NRYKIS 70



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.126    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,193,052
Number of extensions: 32740
Number of successful extensions: 124
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 5
Length of query: 191
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 98
Effective length of database: 8,556,881
Effective search space: 838574338
Effective search space used: 838574338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)