BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0253000 Os04g0253000|AK073668
(191 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0253000 Similar to Histone H1 141 3e-34
Os06g0130800 Histone H5 family protein 89 1e-18
Os03g0799000 Similar to Histone H1 80 9e-16
Os07g0184800 Similar to Variant of histone H1 79 2e-15
>Os04g0253000 Similar to Histone H1
Length = 191
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 37 YFEMIKEAITVLKERTGSSAHAIAKYMEEKHGASLPANYKKMLSIQLRGFASKGKLVKVK 96
YFEMIKEAITVLKERTGSSAHAIAKYMEEKHGASLPANYKKMLSIQLRGFASKGKLVKVK
Sbjct: 37 YFEMIKEAITVLKERTGSSAHAIAKYMEEKHGASLPANYKKMLSIQLRGFASKGKLVKVK 96
Query: 97 ASYKLS 102
ASYKLS
Sbjct: 97 ASYKLS 102
>Os06g0130800 Histone H5 family protein
Length = 240
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 55/68 (80%), Gaps = 2/68 (2%)
Query: 37 YFEMIKEAITVL--KERTGSSAHAIAKYMEEKHGASLPANYKKMLSIQLRGFASKGKLVK 94
YFEMIKEAI L + GSS +AIAKYM E+H LPANY+K+L++QLR FA+KG+LVK
Sbjct: 83 YFEMIKEAIMALDGNGKAGSSPYAIAKYMGEQHMGVLPANYRKVLAVQLRNFAAKGRLVK 142
Query: 95 VKASYKLS 102
VKAS+KLS
Sbjct: 143 VKASFKLS 150
>Os03g0799000 Similar to Histone H1
Length = 293
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%)
Query: 37 YFEMIKEAITVLKERTGSSAHAIAKYMEEKHGASLPANYKKMLSIQLRGFASKGKLVKVK 96
Y EMI EAI LKERTGSS +AI K++E+KH LP+N++K L +Q++ + GKL KVK
Sbjct: 57 YAEMISEAIATLKERTGSSQYAIGKFLEDKHKDHLPSNFRKQLLVQIKKLVAAGKLTKVK 116
Query: 97 ASYKL 101
SYKL
Sbjct: 117 NSYKL 121
>Os07g0184800 Similar to Variant of histone H1
Length = 278
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 48/66 (72%)
Query: 37 YFEMIKEAITVLKERTGSSAHAIAKYMEEKHGASLPANYKKMLSIQLRGFASKGKLVKVK 96
Y EMI EAI LKERTGSS+ AI K++ HGA+LP N++K+LS L+ + GKL KVK
Sbjct: 79 YAEMIMEAIVALKERTGSSSQAIGKHIHANHGANLPPNFRKLLSGNLKKLTAAGKLAKVK 138
Query: 97 ASYKLS 102
S+KLS
Sbjct: 139 NSFKLS 144
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.126 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,766,572
Number of extensions: 47314
Number of successful extensions: 156
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 4
Length of query: 191
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 96
Effective length of database: 12,075,471
Effective search space: 1159245216
Effective search space used: 1159245216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)