BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0127000 Os06g0127000|AK100186
(233 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0127000 Peroxisomal biogenesis factor 11 family protein 423 e-119
Os03g0117100 Peroxisomal biogenesis factor 11 family protein 322 2e-88
>Os06g0127000 Peroxisomal biogenesis factor 11 family protein
Length = 233
Score = 423 bits (1088), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/233 (90%), Positives = 212/233 (90%)
Query: 1 MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVF 60
MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVF
Sbjct: 1 MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVF 60
Query: 61 RLFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAE 120
RLFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAE
Sbjct: 61 RLFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAE 120
Query: 121 FLSKIAFYCFLGSNTCTSIIEVAELQRXXXXXXXXXXXXXXXXXXXXXQYQMKLQKCNER 180
FLSKIAFYCFLGSNTCTSIIEVAELQR QYQMKLQKCNER
Sbjct: 121 FLSKIAFYCFLGSNTCTSIIEVAELQRLSKSMKKLEKELKHQELLKNEQYQMKLQKCNER 180
Query: 181 RLALIKSSLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 233
RLALIKSSLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQLLPAPAKSK
Sbjct: 181 RLALIKSSLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 233
>Os03g0117100 Peroxisomal biogenesis factor 11 family protein
Length = 237
Score = 322 bits (824), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 147/230 (63%), Positives = 186/230 (80%)
Query: 1 MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVF 60
MS+L++ RA+L L++LYLNKAEARDKICRAIQYGSKF+SNGQPG AQ+VD+ST+LARKVF
Sbjct: 1 MSTLDATRAELGLVVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQDVDRSTTLARKVF 60
Query: 61 RLFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAE 120
RL K+VNDLH LISPPAKGTPL L+LLGKSKNALLSTFLFLDQ VW GRTGIYKNKER +
Sbjct: 61 RLLKWVNDLHGLISPPAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRTGIYKNKERTD 120
Query: 121 FLSKIAFYCFLGSNTCTSIIEVAELQRXXXXXXXXXXXXXXXXXXXXXQYQMKLQKCNER 180
+ +I+ YC++ S+ C ++E+ EL+R QY+ K+++ +ER
Sbjct: 121 RIVRISLYCWMASSVCAGLVELGELKRLSKSMRKLARELRDTDKYENDQYKSKMKQSDER 180
Query: 181 RLALIKSSLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQLLPAPA 230
LAL+K+++D+VVA+GLLQL+PKK+TPRVTGAFGF +SLI+CYQ LP+ A
Sbjct: 181 LLALVKAAMDVVVAVGLLQLSPKKITPRVTGAFGFVTSLISCYQQLPSRA 230
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,247,473
Number of extensions: 216213
Number of successful extensions: 438
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 2
Length of query: 233
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 135
Effective length of database: 11,918,829
Effective search space: 1609041915
Effective search space used: 1609041915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)