Os03g0117100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peroxisomal biogenesis factor 11 family protein.
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Os03g0117100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peroxisomal biogenesis factor 11 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.95 | 0.205 | 15.5 | -0.0393 | 0.615 | -0.439 | -0.0586 | 0.132 | -0.0506 | 0.989 | 1.848 | 259 | -- | -- |
| 18.97 | 0.203 | 15.5 | -0.0404 | 0.608 | -0.449 | -0.105 | -- | -0.0542 | 0.968 | 1.753 | 259 | -- | -- |
| 18.96 | 0.203 | 15.5 | -0.0397 | 0.613 | -0.444 | -- | 0.176 | -0.0509 | 0.99 | 1.927 | 259 | -- | -- |
| 19.03 | 0.203 | 15.5 | -0.0378 | 0.616 | -0.441 | -- | -- | -0.0508 | 0.992 | 2.17 | 259 | -- | -- |
| 27.21 | 0.243 | 15.5 | -0.00978 | -- | -1.04 | -- | 0.0871 | -0.00567 | -- | -0.00016 | 212 | -- | -- |
| 21.53 | 0.218 | 15.5 | -0.0573 | 0.877 | -- | -0.109 | -- | -0.0831 | 1.41 | -- | -- | -- | -- |
| 21.58 | 0.218 | 15.5 | -0.0536 | 0.877 | -- | -- | -- | -0.0825 | 1.42 | -- | -- | -- | -- |
| 27.22 | 0.243 | 15.5 | -0.0139 | -- | -1.05 | -- | -- | -0.00978 | -- | -0.06071 | 212 | -- | -- |
| 19.07 | 0.203 | 15.5 | -- | 0.613 | -0.444 | -- | -- | -0.0464 | 0.985 | 2 | 259 | -- | -- |
| 68.84 | 0.388 | 15.5 | -0.0189 | -- | -- | -- | -- | -0.0639 | -- | -- | -- | -- | -- |
| 21.66 | 0.218 | 15.5 | -- | 0.876 | -- | -- | -- | -0.0765 | 1.42 | -- | -- | -- | -- |
| 27.22 | 0.243 | 15.5 | -- | -- | -1.05 | -- | -- | -0.0082 | -- | -0.7695 | 212 | -- | -- |
| 68.85 | 0.387 | 15.5 | -- | -- | -- | -- | -- | -0.0618 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.03 | radiation | 40 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 5 | 18.07 | radiation | 30 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 12 | 18.26 | radiation | 30 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 14 | 18.29 | radiation | 20 | 270 | < th | dose independent | rect. | 7 | 12 |
| 22 | 18.44 | radiation | 40 | 270 | < th | dose dependent | sin | 22 | NA |
| 23 | 18.45 | radiation | 30 | 90 | < th | dose dependent | sin | 19 | NA |
| 38 | 18.50 | radiation | 40 | 270 | < th | dose independent | sin | 19 | NA |
| 69 | 18.62 | radiation | 20 | 90 | < th | dose independent | rect. | 7 | 21 |
| 71 | 18.62 | radiation | 30 | 90 | < th | dose dependent | rect. | 7 | 18 |
| 82 | 18.66 | radiation | 20 | 270 | < th | dose independent | rect. | 5 | 22 |
| 99 | 18.69 | radiation | 40 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 119 | 18.74 | radiation | 20 | 90 | < th | dose independent | rect. | 7 | 18 |
| 164 | 18.83 | radiation | 40 | 270 | > th | dose independent | rect. | 12 | 23 |
| 178 | 18.84 | radiation | 10 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 202 | 18.87 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 208 | 18.88 | radiation | 40 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 242 | 18.92 | radiation | 10 | 270 | > th | dose dependent | sin | 22 | NA |
| 244 | 18.92 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 272 | 18.94 | radiation | 40 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 327 | 18.97 | humidity | 70 | 90 | > th | dose independent | rect. | 7 | 14 |
| 330 | 18.97 | radiation | 20 | 270 | < th | dose independent | rect. | 20 | 23 |
| 354 | 18.98 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 515 | 18.99 | radiation | 20 | 270 | > th | dose independent | rect. | 10 | 23 |
| 563 | 19.01 | radiation | 40 | 270 | > th | dose independent | sin | 20 | NA |
| 575 | 19.02 | radiation | 20 | 270 | > th | dose independent | sin | 23 | NA |
| 588 | 19.03 | radiation | 40 | 720 | < th | dose independent | rect. | 7 | 6 |
| 592 | 19.03 | radiation | 20 | 10 | < th | dose independent | rect. | 7 | 22 |
| 595 | 19.03 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 603 | 19.03 | radiation | 40 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 618 | 19.05 | radiation | 20 | 270 | > th | dose independent | rect. | 7 | 9 |
| 661 | 19.05 | radiation | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 665 | 19.06 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 6 |
| 685 | 19.06 | radiation | 40 | 720 | < th | dose independent | rect. | 15 | 20 |
| 702 | 19.06 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 740 | 19.08 | radiation | 40 | 270 | > th | dose independent | no | NA | NA |
| 823 | 19.08 | radiation | 40 | 720 | < th | dose independent | rect. | 16 | 18 |
| 913 | 19.09 | radiation | 40 | 720 | < th | dose independent | rect. | 7 | 4 |
| 976 | 19.10 | radiation | 40 | 720 | < th | dose dependent | rect. | 22 | 14 |
| 998 | 19.11 | radiation | 20 | 270 | > th | dose independent | no | NA | NA |