BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0117100 Os03g0117100|AK070213
         (237 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01820.1  | chr1:296213-297723 REVERSE LENGTH=236              368   e-102
AT2G45740.1  | chr2:18839865-18841102 FORWARD LENGTH=237          364   e-101
AT3G61070.1  | chr3:22604873-22606159 REVERSE LENGTH=232          351   2e-97

>AT1G01820.1 | chr1:296213-297723 REVERSE LENGTH=236
          Length = 235

 Score =  368 bits (944), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/229 (75%), Positives = 205/229 (89%)

Query: 1   MSTLDATRAELGLVVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQDVDRSTTLARKVF 60
           MSTL+ TRAELGLVV+YLNKAEARDKICRAIQYGSKF+S+GQPGTAQ+VD++T+LARKVF
Sbjct: 1   MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60

Query: 61  RLLKWVNDLHGLISPPAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRTGIYKNKERTD 120
           RL K+VNDLH LISP  KGTPL LVLLGKSKNALLSTFLFLDQ VWLGRTGIYK+KER +
Sbjct: 61  RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAE 120

Query: 121 RIVRISLYCWMASSVCAGLVELGELKRLSKSMRKLARELRDTDKYENDQYKSKMKQSDER 180
            + RISL+CWM SSVC  LVE+GEL RLS S++KL +E+ + DK++N+QY++K+++S+ER
Sbjct: 121 ILGRISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQYRAKVEKSNER 180

Query: 181 LLALVKAAMDVVVAVGLLQLSPKKITPRVTGAFGFVTSLISCYQQLPSR 229
            LAL+KA MDVVVA GLLQL+PKK+TPRVTGAFGF +SLISCYQ LPS 
Sbjct: 181 SLALIKAGMDVVVAFGLLQLAPKKVTPRVTGAFGFASSLISCYQLLPSH 229



>AT2G45740.1 | chr2:18839865-18841102 FORWARD LENGTH=237
          Length = 236

 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/233 (73%), Positives = 207/233 (88%), Gaps = 1/233 (0%)

Query: 2   STLDATRAELGLVVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQDVDRSTTLARKVFR 61
           +TLD +RAEL LVV+YLNKAEARDK+CRAIQYGSKF+S GQPGTAQ+VD+ST+LARKVFR
Sbjct: 3   TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62

Query: 62  LLKWVNDLHGLISPPAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRTGIYKNKERTDR 121
           L K+VNDLHGLISP  KGTPL LVLLGKSKNALLSTFLFLDQ VWLGR+GIYKNKER + 
Sbjct: 63  LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAEL 122

Query: 122 IVRISLYCWMASSVCAGLVELGELKRLSKSMRKLARELRDTDKYENDQYKSKMKQSDERL 181
           + RISL+CWM SSVC  LVE+GE+ RLS SM+K+ + L++ +KY+++ Y++K+K+S+ER 
Sbjct: 123 LGRISLFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKLKKSNERS 182

Query: 182 LALVKAAMDVVVAVGLLQLSPKKITPRVTGAFGFVTSLISCYQQLPSRAPAIK 234
           LAL+K+AMD+VVA GLLQL+P KITPRVTGAFGF+TS+ISCYQ LP+R P IK
Sbjct: 183 LALIKSAMDIVVAAGLLQLAPTKITPRVTGAFGFITSIISCYQLLPTR-PKIK 234



>AT3G61070.1 | chr3:22604873-22606159 REVERSE LENGTH=232
          Length = 231

 Score =  351 bits (901), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 168/234 (71%), Positives = 203/234 (86%), Gaps = 5/234 (2%)

Query: 1   MSTLDATRAELGLVVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQDVDRSTTLARKVF 60
           M+TLD TRAEL L+VLYLNKAEARDKICRAIQYGSKF+S GQPGTAQ VD++T+LARKVF
Sbjct: 1   MTTLDLTRAELALIVLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVF 60

Query: 61  RLLKWVNDLHGLISPPAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRTGIYKNKERTD 120
           RL K+VND HGLISP  KGTPL LVLLGKSKNALLSTFLFLDQ VWLGR+GIYKNKERT+
Sbjct: 61  RLFKFVNDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERTE 120

Query: 121 RIVRISLYCWMASSVCAGLVELGELKRLSKSMRKLARELRDTDKYENDQYKSKMKQSDER 180
            + RISL+CW+ SSVC   VE+GEL RLS SM+K+ +EL    K +++ Y++K+++S++R
Sbjct: 121 LLGRISLFCWLGSSVCTSAVEIGELGRLSSSMKKMEKEL----KADDELYRAKLQKSNDR 176

Query: 181 LLALVKAAMDVVVAVGLLQLSPKKITPRVTGAFGFVTSLISCYQQLPSRAPAIK 234
            LAL+K++MD++VA+GLLQL+PK I+PRVTGAFGF TSLISCYQ LPSR P +K
Sbjct: 177 TLALIKSSMDIIVAIGLLQLAPKTISPRVTGAFGFTTSLISCYQLLPSR-PKLK 229



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,619,781
Number of extensions: 175962
Number of successful extensions: 536
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 4
Length of query: 237
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 141
Effective length of database: 8,474,633
Effective search space: 1194923253
Effective search space used: 1194923253
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)