Os06g0127000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peroxisomal biogenesis factor 11 family protein.
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Os06g0127000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peroxisomal biogenesis factor 11 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.68 | 0.247 | 12 | -0.464 | 0.102 | 0.322 | -0.583 | -1.03 | 0.217 | 8.13 | 19.5 | 855 | -- | -- |
| 28.9 | 0.25 | 12 | -0.438 | 0.109 | 0.619 | -0.381 | -- | 0.229 | 7.16 | 18.4 | 2245 | -- | -- |
| 28.32 | 0.248 | 12.1 | -0.514 | 0.0956 | 0.274 | -- | -0.996 | 0.201 | 5.99 | 20.6 | 1112 | -- | -- |
| 29.18 | 0.252 | 12 | -0.434 | 0.106 | 0.611 | -- | -- | 0.225 | 5.89 | 18.4 | 2243 | -- | -- |
| 28.83 | 0.25 | 12.1 | -0.513 | -- | 0.258 | -- | -1.05 | 0.204 | -- | 20.6 | 1156 | -- | -- |
| 34.49 | 0.275 | 12 | -0.164 | 0.116 | -- | -0.264 | -- | 0.33 | 5.62 | -- | -- | -- | -- |
| 34.61 | 0.275 | 12 | -0.166 | 0.117 | -- | -- | -- | 0.33 | 4.69 | -- | -- | -- | -- |
| 29.76 | 0.254 | 12 | -0.439 | -- | 0.613 | -- | -- | 0.225 | -- | 18.4 | 2247 | -- | -- |
| 32.69 | 0.266 | 12 | -- | 0.11 | 0.328 | -- | -- | 0.307 | 5.43 | 19.3 | 888 | -- | -- |
| 35.34 | 0.278 | 12 | -0.161 | -- | -- | -- | -- | 0.333 | -- | -- | -- | -- | -- |
| 35.33 | 0.278 | 12 | -- | 0.114 | -- | -- | -- | 0.349 | 4.73 | -- | -- | -- | -- |
| 33.34 | 0.269 | 12 | -- | -- | 0.331 | -- | -- | 0.309 | -- | 19.3 | 904 | -- | -- |
| 36.02 | 0.28 | 12 | -- | -- | -- | -- | -- | 0.351 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.35 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 2 | 25.43 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 3 | 25.43 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 18 |
| 23 | 25.60 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 25 | 25.61 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 30 | 25.63 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 33 | 25.64 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 34 | 25.64 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 51 | 25.68 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 72 | 25.76 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 74 | 25.76 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 77 | 25.77 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 87 | 25.78 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 18 |
| 96 | 25.80 | humidity | 90.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 130 | 25.85 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 174 | 25.91 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 259 | 26.03 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 337 | 26.21 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 340 | 26.23 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 386 | 26.38 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 387 | 26.38 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 433 | 26.51 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 443 | 26.53 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 449 | 26.54 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 504 | 26.65 | humidity | 90.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 514 | 26.68 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 525 | 26.68 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 560 | 26.74 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 581 | 26.79 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 13 |
| 622 | 26.86 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 689 | 26.97 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 696 | 26.98 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 699 | 26.99 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 725 | 27.04 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 20 |
| 732 | 27.05 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 750 | 27.09 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 760 | 27.11 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 767 | 27.12 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 768 | 27.13 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 780 | 27.14 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 811 | 27.19 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 831 | 27.24 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 834 | 27.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 837 | 27.26 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 2 |
| 846 | 27.27 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 847 | 27.27 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 14 |
| 853 | 27.28 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 865 | 27.28 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 868 | 27.28 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 885 | 27.31 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 897 | 27.32 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 901 | 27.32 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 903 | 27.33 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 904 | 27.33 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 905 | 27.33 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 913 | 27.33 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 914 | 27.33 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 920 | 27.34 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 931 | 27.35 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 947 | 27.37 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 952 | 27.37 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 960 | 27.38 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 974 | 27.39 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 12 |
| 985 | 27.40 | humidity | 90.0 | 14400 | < th | dose independent | no | NA | NA |
| 991 | 27.40 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 9 | 2 |