BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0127000 Os06g0127000|AK100186
(233 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G01820.1 | chr1:296213-297723 REVERSE LENGTH=236 346 5e-96
AT2G45740.1 | chr2:18839865-18841102 FORWARD LENGTH=237 330 6e-91
AT3G61070.1 | chr3:22604873-22606159 REVERSE LENGTH=232 326 5e-90
AT1G47750.1 | chr1:17569388-17570134 REVERSE LENGTH=249 48 4e-06
>AT1G01820.1 | chr1:296213-297723 REVERSE LENGTH=236
Length = 235
Score = 346 bits (888), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 166/233 (71%), Positives = 193/233 (82%)
Query: 1 MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVF 60
MS+LE+ RA+L L+++YLNKAEARDKICRAIQYGSKF+S+GQPG AQNVDK+TSLARKVF
Sbjct: 1 MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60
Query: 61 RLFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAE 120
RLFKFVNDLHALISP KGTPLPL+LLGKSKNALLSTFLFLDQIVW GRTGIYK+KERAE
Sbjct: 61 RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAE 120
Query: 121 FLSKIAFYCFLGSNTCTSIIEVAELQRXXXXXXXXXXXXXXXXXXXXXQYQMKLQKCNER 180
L +I+ +C++GS+ CTS++EV EL R QY+ K++K NER
Sbjct: 121 ILGRISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQYRAKVEKSNER 180
Query: 181 RLALIKSSLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 233
LALIK+ +D+VVA GLLQLAPKKVTPRVTGAFGFASSLI+CYQLLP+ KSK
Sbjct: 181 SLALIKAGMDVVVAFGLLQLAPKKVTPRVTGAFGFASSLISCYQLLPSHPKSK 233
>AT2G45740.1 | chr2:18839865-18841102 FORWARD LENGTH=237
Length = 236
Score = 330 bits (845), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 157/232 (67%), Positives = 187/232 (80%)
Query: 2 SSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVFR 61
++L+ +RA+LAL+++YLNKAEARDK+CRAIQYGSKF+S GQPG AQNVDKSTSLARKVFR
Sbjct: 3 TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62
Query: 62 LFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAEF 121
LFKFVNDLH LISP KGTPLPL+LLGKSKNALLSTFLFLDQIVW GR+GIYKNKERAE
Sbjct: 63 LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAEL 122
Query: 122 LSKIAFYCFLGSNTCTSIIEVAELQRXXXXXXXXXXXXXXXXXXXXXQYQMKLQKCNERR 181
L +I+ +C++GS+ CT+++EV E+ R Y+ KL+K NER
Sbjct: 123 LGRISLFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKLKKSNERS 182
Query: 182 LALIKSSLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 233
LALIKS++DIVVA GLLQLAP K+TPRVTGAFGF +S+I+CYQLLP K K
Sbjct: 183 LALIKSAMDIVVAAGLLQLAPTKITPRVTGAFGFITSIISCYQLLPTRPKIK 234
>AT3G61070.1 | chr3:22604873-22606159 REVERSE LENGTH=232
Length = 231
Score = 326 bits (836), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 159/233 (68%), Positives = 185/233 (79%), Gaps = 4/233 (1%)
Query: 1 MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVF 60
M++L+ RA+LAL++LYLNKAEARDKICRAIQYGSKF+S GQPG AQ VDK+TSLARKVF
Sbjct: 1 MTTLDLTRAELALIVLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVF 60
Query: 61 RLFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAE 120
RLFKFVND H LISP KGTPLPL+LLGKSKNALLSTFLFLDQIVW GR+GIYKNKER E
Sbjct: 61 RLFKFVNDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERTE 120
Query: 121 FLSKIAFYCFLGSNTCTSIIEVAELQRXXXXXXXXXXXXXXXXXXXXXQYQMKLQKCNER 180
L +I+ +C+LGS+ CTS +E+ EL R Y+ KLQK N+R
Sbjct: 121 LLGRISLFCWLGSSVCTSAVEIGELGRLSSSMKKMEKELKADDEL----YRAKLQKSNDR 176
Query: 181 RLALIKSSLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 233
LALIKSS+DI+VAIGLLQLAPK ++PRVTGAFGF +SLI+CYQLLP+ K K
Sbjct: 177 TLALIKSSMDIIVAIGLLQLAPKTISPRVTGAFGFTTSLISCYQLLPSRPKLK 229
>AT1G47750.1 | chr1:17569388-17570134 REVERSE LENGTH=249
Length = 248
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 13/140 (9%)
Query: 17 YLNKAEARDKICRAIQYGSKFVSNGQPGPA--------QNVDKSTSLARKVFRLFKFVND 68
YL+K + DK+ + +Y +K + P ++ + S ++RK FRL KFV D
Sbjct: 24 YLSKRDGVDKLLKISRYATKIILASSLIPETRSIIPRLKSFESSVGVSRKAFRLGKFVQD 83
Query: 69 LHALISPPAKGT-PLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAEFLSKIAF 127
++AL S L L+++ L + F++Q +W ++G+ K +++L KI+
Sbjct: 84 INALRSSRWDSNHELVLLIIAYGGEGL---YYFVEQFIWLTKSGLIDAKH-SKWLQKISA 139
Query: 128 YCFLGSNTCTSIIEVAELQR 147
+ L + I++ +L++
Sbjct: 140 WAELVGYVGSVSIKIRDLRK 159
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,016,924
Number of extensions: 140843
Number of successful extensions: 296
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 4
Length of query: 233
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 138
Effective length of database: 8,502,049
Effective search space: 1173282762
Effective search space used: 1173282762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)