BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0109000 Os06g0109000|006-024-C07
         (363 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0109000  Phosphoglycerate/bisphosphoglycerate mutase fa...   556   e-159
Os05g0141700  Phosphoglycerate/bisphosphoglycerate mutase fa...   223   2e-58
Os10g0202200                                                      153   2e-37

>Os06g0109000 Phosphoglycerate/bisphosphoglycerate mutase family protein
          Length = 363

 Score =  556 bits (1433), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 280/335 (83%), Positives = 280/335 (83%)

Query: 29  EDTLGVPRSRRPTHDTELAQSQRFPELVTPYGAASXXXXXXXXXXXXXXXXXXXXXXGES 88
           EDTLGVPRSRRPTHDTELAQSQRFPELVTPYGAAS                      GES
Sbjct: 29  EDTLGVPRSRRPTHDTELAQSQRFPELVTPYGAASYLPHQQRYPPPPRPRRIVLVRHGES 88

Query: 89  EGNVDEAAYTRVPDPRIGLTPQGWRDAEDCGRRLRHLLSTGGGDDWKVYFYVSPYXXXXX 148
           EGNVDEAAYTRVPDPRIGLTPQGWRDAEDCGRRLRHLLSTGGGDDWKVYFYVSPY     
Sbjct: 89  EGNVDEAAYTRVPDPRIGLTPQGWRDAEDCGRRLRHLLSTGGGDDWKVYFYVSPYRRTLE 148

Query: 149 XXXXXXXAFEARRIAGVREEPRLREQDFGNFQDRDKMRVEKEIXXXXXXXXXXXPNGESA 208
                  AFEARRIAGVREEPRLREQDFGNFQDRDKMRVEKEI           PNGESA
Sbjct: 149 TLRGLGRAFEARRIAGVREEPRLREQDFGNFQDRDKMRVEKEIRRRYGRFFYRFPNGESA 208

Query: 209 ADVYDRITGFRETLRADIDIGRFQPPGERNPDMNVVLVSHGLTLRVFLMRWYKWTVSQFE 268
           ADVYDRITGFRETLRADIDIGRFQPPGERNPDMNVVLVSHGLTLRVFLMRWYKWTVSQFE
Sbjct: 209 ADVYDRITGFRETLRADIDIGRFQPPGERNPDMNVVLVSHGLTLRVFLMRWYKWTVSQFE 268

Query: 269 GLANLSNGGALVMQTGAGGRYSLLVHHSVDELREFGLTDDMIEDQKWQMTARPGELNYNF 328
           GLANLSNGGALVMQTGAGGRYSLLVHHSVDELREFGLTDDMIEDQKWQMTARPGELNYNF
Sbjct: 269 GLANLSNGGALVMQTGAGGRYSLLVHHSVDELREFGLTDDMIEDQKWQMTARPGELNYNF 328

Query: 329 ITNGPSXXXXXXXXXXDKHKAAIDDGTGGSATAPS 363
           ITNGPS          DKHKAAIDDGTGGSATAPS
Sbjct: 329 ITNGPSFFTHFTHHHHDKHKAAIDDGTGGSATAPS 363



>Os05g0141700 Phosphoglycerate/bisphosphoglycerate mutase family protein
          Length = 295

 Score =  223 bits (567), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/234 (48%), Positives = 148/234 (63%), Gaps = 4/234 (1%)

Query: 86  GESEGNVDEAAYTRVPDPRIGLTPQGWRDAEDCGRRLRHLLSTGGGDDWKVYFYVSPYXX 145
           GES+GN+D +AYT  PD RI LTP G   A   G+ +  ++S+    +WKVYFYVSPY  
Sbjct: 23  GESQGNLDMSAYTTTPDYRIPLTPLGVDQARAAGKGILDVVSSAA--NWKVYFYVSPYER 80

Query: 146 XXXXXXXXXXAFEARRIAGVREEPRLREQDFGNFQDRDKMRVEKEIXXXXXXXXXXXPNG 205
                     AF   R+ G REE R+REQDFGNFQ  ++MR  KE            P G
Sbjct: 81  TRATLREIGAAFPRHRVIGAREECRVREQDFGNFQVEERMRAVKETRDRFGRFFFRFPEG 140

Query: 206 ESAADVYDRITGFRETLRADIDIGRFQPPGERNPDMNVVLVSHGLTLRVFLMRWYKWTVS 265
           ESAADV+DR+  F E+L  DID+GR +     + + N+V+VSHGLT RVFLM+W+KWTV 
Sbjct: 141 ESAADVFDRVASFLESLWRDIDMGRLEQDA--SCETNLVIVSHGLTSRVFLMKWFKWTVD 198

Query: 266 QFEGLANLSNGGALVMQTGAGGRYSLLVHHSVDELREFGLTDDMIEDQKWQMTA 319
           QFE L N  N    VMQ G  G YSLL+HH+ +EL+ +GL+ +MI DQ+W+ +A
Sbjct: 199 QFERLNNFDNCEFRVMQLGPAGEYSLLIHHTKEELQRWGLSPEMIADQQWRASA 252



>Os10g0202200 
          Length = 218

 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 110/203 (54%), Gaps = 28/203 (13%)

Query: 141 SPYXXXXXXXXXXXXAFEARRIAGVREEPRLREQDFGNFQDRDKMRVEKEIXXXX--XXX 198
           +PY            AFEARRIAGVREEPRLREQDFGNFQD DKMR ++           
Sbjct: 8   TPYRHMLETLHGLGRAFEARRIAGVREEPRLREQDFGNFQDVDKMRQQRRRRQRARRHVL 67

Query: 199 XXXXPNGESAADVYDRITGFRETLRADIDIGRFQPPGERNPDMNVV-------------- 244
               P G +      R  G  E    D    R QP   R      V              
Sbjct: 68  QMQQPRGRALGV---RGGGCAEHHHVDHCHVRAQPAWARRGGAGAVRPDDAGSGRMTSRS 124

Query: 245 ------LVSHGLTLR---VFLMRWYKWTVSQFEGLANLSNGGALVMQTGAGGRYSLLVHH 295
                   +  L+ R   +F MRWYKW V+QFEGLANLSN GALVMQTGAGGRYSLLVHH
Sbjct: 125 SPCSRRARTSSLSTRGHCIFSMRWYKWIVTQFEGLANLSNDGALVMQTGAGGRYSLLVHH 184

Query: 296 SVDELREFGLTDDMIEDQKWQMT 318
           SV+ELR FGLTDDMIEDQ++  T
Sbjct: 185 SVEELRVFGLTDDMIEDQRFAWT 207



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,429,945
Number of extensions: 441493
Number of successful extensions: 749
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 4
Length of query: 363
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 261
Effective length of database: 11,709,973
Effective search space: 3056302953
Effective search space used: 3056302953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)