Os06g0109000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphoglycerate/bisphosphoglycerate mutase family protein.
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Os06g0109000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphoglycerate/bisphosphoglycerate mutase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.8 | 0.571 | 10.9 | -0.725 | 1.81 | 0.874 | 0.0126 | 0.5 | -0.263 | 22.2 | 5.234 | 37 | -- | -- |
| 148.09 | 0.567 | 10.9 | -0.699 | 1.81 | 0.878 | 0.565 | -- | -0.261 | 22.2 | 4.883 | 39 | -- | -- |
| 147.79 | 0.566 | 10.9 | -0.726 | 1.81 | 0.875 | -- | 0.515 | -0.262 | 22.2 | 5.41 | 36 | -- | -- |
| 149.35 | 0.569 | 10.9 | -0.72 | 1.8 | 0.88 | -- | -- | -0.263 | 22.2 | 4.91 | 36 | -- | -- |
| 194.65 | 0.653 | 10.9 | -0.711 | -- | 2.08 | -- | 0.36 | -0.247 | -- | 6.039 | 13 | -- | -- |
| 161.91 | 0.597 | 10.9 | -0.712 | 2.76 | -- | 0.566 | -- | -0.323 | 22.9 | -- | -- | -- | -- |
| 163.26 | 0.598 | 10.9 | -0.735 | 2.76 | -- | -- | -- | -0.325 | 22.9 | -- | -- | -- | -- |
| 195.45 | 0.654 | 10.9 | -0.714 | -- | 2.08 | -- | -- | -0.247 | -- | 6.035 | 13 | -- | -- |
| 162.99 | 0.595 | 10.9 | -- | 1.78 | 0.901 | -- | -- | -0.185 | 22.2 | 4.498 | 38 | -- | -- |
| 635.51 | 1.18 | 10.9 | -0.676 | -- | -- | -- | -- | -0.307 | -- | -- | -- | -- | -- |
| 177.47 | 0.623 | 10.9 | -- | 2.75 | -- | -- | -- | -0.243 | 22.9 | -- | -- | -- | -- |
| 208.53 | 0.675 | 10.8 | -- | -- | 2.07 | -- | -- | -0.161 | -- | 5.75 | 23 | -- | -- |
| 647.57 | 1.19 | 10.8 | -- | -- | -- | -- | -- | -0.232 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.50 | humidity | 80.0 | 10 | > th | dose independent | rect. | 2 | 14 |
| 8 | 146.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 10 | 146.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 15 | 146.25 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 17 | 146.25 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 18 | 146.35 | humidity | 80.0 | 10 | > th | dose independent | sin | 2 | NA |
| 19 | 146.52 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 22 | 146.69 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 31 | 147.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 38 | 147.34 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 41 | 147.34 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 48 | 147.45 | humidity | 80.0 | 10 | < th | dose independent | rect. | 21 | 20 |
| 50 | 147.49 | radiation | 10.0 | 720 | < th | dose independent | sin | 4 | NA |
| 66 | 147.84 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 71 | 147.90 | radiation | 1.0 | 30 | > th | dose independent | sin | 1 | NA |
| 73 | 147.93 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 78 | 147.96 | radiation | 10.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 79 | 147.97 | radiation | 1.0 | 30 | < th | dose independent | sin | 1 | NA |
| 80 | 147.99 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 81 | 147.99 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 82 | 147.99 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 83 | 147.99 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 85 | 148.01 | radiation | 10.0 | 720 | < th | dose independent | rect. | 5 | 6 |
| 86 | 148.01 | temperature | 15.0 | 43200 | < th | dose dependent | sin | 1 | NA |
| 87 | 148.02 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 89 | 148.02 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 94 | 148.03 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 4 | 13 |
| 95 | 148.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 98 | 148.04 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 121 | 148.09 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 1 | 21 |
| 122 | 148.09 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 5 | 21 |
| 167 | 148.16 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 168 | 148.16 | temperature | 15.0 | 43200 | < th | dose dependent | sin | 18 | NA |
| 189 | 148.19 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 190 | 148.19 | humidity | 80.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 191 | 148.19 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 204 | 148.21 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 10 | 14 |
| 220 | 148.23 | temperature | 15.0 | 43200 | < th | dose dependent | no | NA | NA |
| 233 | 148.24 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 240 | 148.25 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 15 | 23 |
| 242 | 148.25 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 19 | 23 |
| 263 | 148.27 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 331 | 148.34 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 349 | 148.36 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 18 |
| 361 | 148.37 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 406 | 148.42 | humidity | 80.0 | 10 | < th | dose independent | sin | 2 | NA |
| 480 | 148.51 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 11 |
| 533 | 148.57 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 549 | 148.61 | wind | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 557 | 148.62 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 567 | 148.64 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 588 | 148.67 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 595 | 148.69 | humidity | 80.0 | 10 | < th | dose independent | rect. | 2 | 15 |
| 611 | 148.72 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 16 | 17 |
| 622 | 148.73 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 641 | 148.76 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 682 | 148.86 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 23 | 21 |
| 684 | 148.87 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 693 | 148.89 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 695 | 148.90 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 701 | 148.92 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 16 | 11 |
| 717 | 148.97 | humidity | 80.0 | 10 | < th | dose independent | rect. | 6 | 11 |
| 726 | 148.98 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 13 | 20 |
| 737 | 149.00 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 742 | 149.02 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 746 | 149.02 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 18 |
| 754 | 149.04 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 4 |
| 763 | 149.06 | wind | 1.0 | 43200 | > th | dose independent | rect. | 19 | 9 |
| 767 | 149.07 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 769 | 149.07 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 16 | 23 |
| 770 | 149.08 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 776 | 149.09 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 779 | 149.09 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 1 | 14 |
| 788 | 149.11 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 790 | 149.11 | humidity | 80.0 | 43200 | > th | dose dependent | no | NA | NA |
| 794 | 149.11 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 808 | 149.14 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 816 | 149.15 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 822 | 149.17 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 826 | 149.18 | radiation | 10.0 | 720 | < th | dose independent | rect. | 5 | 3 |
| 832 | 149.19 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 834 | 149.19 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 4 | NA |
| 837 | 149.20 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 854 | 149.22 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 858 | 149.22 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 873 | 149.25 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 876 | 149.25 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 10 | 23 |
| 880 | 149.26 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 884 | 149.27 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 886 | 149.27 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 887 | 149.27 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 18 | 9 |
| 897 | 149.28 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 902 | 149.29 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 16 |
| 904 | 149.29 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 24 | 7 |
| 916 | 149.30 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 918 | 149.31 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 938 | 149.33 | humidity | 80.0 | 10 | > th | dose independent | rect. | 7 | 9 |
| 940 | 149.33 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 945 | 149.34 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 956 | 149.35 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 19 | 11 |
| 958 | 149.36 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 960 | 149.36 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 975 | 149.38 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 979 | 149.38 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 19 |
| 993 | 149.40 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 995 | 149.40 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 11 |