BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0109000 Os06g0109000|006-024-C07
(363 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G05170.1 | chr3:1466738-1468219 FORWARD LENGTH=317 231 6e-61
AT1G08940.1 | chr1:2877694-2879104 FORWARD LENGTH=282 219 2e-57
>AT3G05170.1 | chr3:1466738-1468219 FORWARD LENGTH=317
Length = 316
Score = 231 bits (588), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 154/241 (63%), Gaps = 7/241 (2%)
Query: 86 GESEGNVDEAAYTRVPDPRIGLTPQGWRDAEDCGRRLRHLLSTG-GGDDWKVYFYVSPYX 144
GESEGN+D AAYT PD +I LT G A++ G RL L+S+ +W+VYFYVSPY
Sbjct: 18 GESEGNLDTAAYTTTPDHKIQLTDSGLLQAQEAGARLHALISSNPSSPEWRVYFYVSPYD 77
Query: 145 XXXXXXXXXXXAFEARRIAGVREEPRLREQDFGNFQDRDKMRVEKEIXXXXXXXXXXXPN 204
+F RR+ GVREE R+REQDFGNFQ +++MR K++ P
Sbjct: 78 RTRSTLREIGRSFSRRRVIGVREECRIREQDFGNFQVKERMRATKKVRERFGRFFYRFPE 137
Query: 205 GESAADVYDRITGFRETLRADIDIGRFQPPGERNP--DMNVVLVSHGLTLRVFLMRWYKW 262
GESAADV+DR++ F E+L DID+ R NP ++N V+VSHGLT RVFLM+W+KW
Sbjct: 138 GESAADVFDRVSSFLESLWRDIDMNRLHI----NPSHELNFVIVSHGLTSRVFLMKWFKW 193
Query: 263 TVSQFEGLANLSNGGALVMQTGAGGRYSLLVHHSVDELREFGLTDDMIEDQKWQMTARPG 322
+V QFEGL N N VM+ G GG YSL +HH+ +EL +GL+ +MI DQKW+ A G
Sbjct: 194 SVEQFEGLNNPGNSEIRVMELGQGGDYSLAIHHTEEELATWGLSPEMIADQKWRANAHKG 253
Query: 323 E 323
E
Sbjct: 254 E 254
>AT1G08940.1 | chr1:2877694-2879104 FORWARD LENGTH=282
Length = 281
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 152/233 (65%), Gaps = 6/233 (2%)
Query: 86 GESEGNVDEAAYTRVPDPRIGLTPQGWRDAEDCGRRLRHLLST--GG--GDDWKVYFYVS 141
GES GN+D AY PD +I LT +G A + G+++R L+ST GG G++W+VYFYVS
Sbjct: 18 GESAGNIDAGAYATTPDHKIPLTEEGRAQAREAGKKMRALISTQSGGACGENWRVYFYVS 77
Query: 142 PYXXXXXXXXXXXXAFEARRIAGVREEPRLREQDFGNFQDRDKMRVEKEIXXXXXXXXXX 201
PY F +R+ GVREE R+REQDFGNFQ ++MRV KE
Sbjct: 78 PYERTRTTLREVGKGFSRKRVIGVREECRIREQDFGNFQVEERMRVVKETRERFGRFFYR 137
Query: 202 XPNGESAADVYDRITGFRETLRADIDIGRFQPPGERNPDMNVVLVSHGLTLRVFLMRWYK 261
P GESAADVYDR++ F E++ D+D+ R Q + + ++N+V+VSHGLT RVFL +W+K
Sbjct: 138 FPEGESAADVYDRVSSFLESMWRDVDMNRHQV--DPSSELNLVIVSHGLTSRVFLTKWFK 195
Query: 262 WTVSQFEGLANLSNGGALVMQTGAGGRYSLLVHHSVDELREFGLTDDMIEDQK 314
WTV++FE L N N VM+ GA G Y+ +HHS +E+ ++G++ DMI+DQK
Sbjct: 196 WTVAEFERLNNFGNCEFRVMELGASGEYTFAIHHSEEEMLDWGMSKDMIDDQK 248
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,696,748
Number of extensions: 247683
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,364,969
Effective search space: 2199986847
Effective search space used: 2199986847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)