Os05g0141700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphoglycerate/bisphosphoglycerate mutase family protein.
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Os05g0141700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphoglycerate/bisphosphoglycerate mutase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.01 | 0.257 | 10.9 | 0.449 | 0.953 | -0.0076 | -0.306 | 3.5 | 0.146 | 4.93 | 10.65 | 3846 | -- | -- |
| 40.33 | 0.296 | 11 | -0.245 | 0.963 | -0.252 | -0.132 | -- | -0.00874 | 4.89 | -2.159 | 11345 | -- | -- |
| 30.17 | 0.256 | 10.9 | 0.45 | 0.952 | -0.013 | -- | 3.57 | 0.146 | 4.92 | 10.91 | 3578 | -- | -- |
| 40.38 | 0.296 | 11 | -0.244 | 0.962 | -0.251 | -- | -- | -0.00955 | 4.89 | -1.26 | 11359 | -- | -- |
| 73.91 | 0.403 | 11 | 0.0546 | -- | -0.97 | -- | 1.83 | 0.126 | -- | 7.886 | 4030 | -- | -- |
| 41.35 | 0.301 | 11 | -0.403 | 0.955 | -- | -0.155 | -- | -0.0931 | 4.92 | -- | -- | -- | -- |
| 41.41 | 0.301 | 11 | -0.403 | 0.954 | -- | -- | -- | -0.0924 | 4.91 | -- | -- | -- | -- |
| 76.71 | 0.41 | 11 | -0.197 | -- | -0.937 | -- | -- | 0.0569 | -- | -2.193 | 14904 | -- | -- |
| 41.25 | 0.299 | 11 | -- | 0.958 | -0.393 | -- | -- | 0.0736 | 4.85 | -3.833 | 14652 | -- | -- |
| 89.36 | 0.442 | 11 | -0.368 | -- | -- | -- | -- | -0.0678 | -- | -- | -- | -- | -- |
| 45.68 | 0.316 | 11 | -- | 0.947 | -- | -- | -- | -0.0475 | 4.92 | -- | -- | -- | -- |
| 77.67 | 0.412 | 11 | -- | -- | -0.999 | -- | -- | 0.0857 | -- | -2.193 | 14904 | -- | -- |
| 92.92 | 0.45 | 11 | -- | -- | -- | -- | -- | -0.027 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.76 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 28.76 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 46 | 29.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 50 | 29.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 150 | 29.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 154 | 29.60 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 244 | 29.77 | temperature | 10 | 4320 | > th | dose dependent | sin | 15 | NA |
| 277 | 29.85 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 311 | 29.91 | temperature | 30 | 4320 | < th | dose dependent | sin | 15 | NA |
| 328 | 29.93 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 832 | 30.39 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 879 | 30.41 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 956 | 30.45 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 23 |