BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0141700 Os05g0141700|AK065644
         (295 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0141700  Phosphoglycerate/bisphosphoglycerate mutase fa...   548   e-156
Os06g0109000  Phosphoglycerate/bisphosphoglycerate mutase fa...   247   6e-66
Os10g0202200                                                       95   5e-20

>Os05g0141700 Phosphoglycerate/bisphosphoglycerate mutase family protein
          Length = 295

 Score =  548 bits (1411), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 267/295 (90%), Positives = 267/295 (90%)

Query: 1   MTRQHHPQCARRLPKRIILVRHGESQGNLDMSAYTTTPDYRIPLTPLGVDQARAAGKGIL 60
           MTRQHHPQCARRLPKRIILVRHGESQGNLDMSAYTTTPDYRIPLTPLGVDQARAAGKGIL
Sbjct: 1   MTRQHHPQCARRLPKRIILVRHGESQGNLDMSAYTTTPDYRIPLTPLGVDQARAAGKGIL 60

Query: 61  DVVSSAANWKVYFYVSPYERTRATLREIGAAFPRHRVIGAREECRVREQDFGNFQVEERM 120
           DVVSSAANWKVYFYVSPYERTRATLREIGAAFPRHRVIGAREECRVREQDFGNFQVEERM
Sbjct: 61  DVVSSAANWKVYFYVSPYERTRATLREIGAAFPRHRVIGAREECRVREQDFGNFQVEERM 120

Query: 121 RAVKETXXXXXXXXXXXPEGESAADVFDRVASFLESLWRDIDMGRLEQDASCETNLVIVS 180
           RAVKET           PEGESAADVFDRVASFLESLWRDIDMGRLEQDASCETNLVIVS
Sbjct: 121 RAVKETRDRFGRFFFRFPEGESAADVFDRVASFLESLWRDIDMGRLEQDASCETNLVIVS 180

Query: 181 HGLTSRVFLMKWFKWTVDQFERLNNFDNCEFRVMQLGPAGEYSLLIHHTKEELQRWGLSP 240
           HGLTSRVFLMKWFKWTVDQFERLNNFDNCEFRVMQLGPAGEYSLLIHHTKEELQRWGLSP
Sbjct: 181 HGLTSRVFLMKWFKWTVDQFERLNNFDNCEFRVMQLGPAGEYSLLIHHTKEELQRWGLSP 240

Query: 241 EMIADQQWRASANRRSWADECSSFLATFFDHWXXXXXXXXXXXXXXXXXTNKLLE 295
           EMIADQQWRASANRRSWADECSSFLATFFDHW                 TNKLLE
Sbjct: 241 EMIADQQWRASANRRSWADECSSFLATFFDHWNEDDNDDDDDGKEENGKTNKLLE 295



>Os06g0109000 Phosphoglycerate/bisphosphoglycerate mutase family protein
          Length = 363

 Score =  247 bits (631), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 161/240 (67%), Gaps = 4/240 (1%)

Query: 17  IILVRHGESQGNLDMSAYTTTPDYRIPLTPLGVDQARAAGKGILDVVSSAA--NWKVYFY 74
           I+LVRHGES+GN+D +AYT  PD RI LTP G   A   G+ +  ++S+    +WKVYFY
Sbjct: 80  IVLVRHGESEGNVDEAAYTRVPDPRIGLTPQGWRDAEDCGRRLRHLLSTGGGDDWKVYFY 139

Query: 75  VSPYERTRATLREIGAAFPRHRVIGAREECRVREQDFGNFQVEERMRAVKETXXXXXXXX 134
           VSPY RT  TLR +G AF   R+ G REE R+REQDFGNFQ  ++MR  KE         
Sbjct: 140 VSPYRRTLETLRGLGRAFEARRIAGVREEPRLREQDFGNFQDRDKMRVEKEIRRRYGRFF 199

Query: 135 XXXPEGESAADVFDRVASFLESLWRDIDMGRLEQDA--SCETNLVIVSHGLTSRVFLMKW 192
              P GESAADV+DR+  F E+L  DID+GR +     + + N+V+VSHGLT RVFLM+W
Sbjct: 200 YRFPNGESAADVYDRITGFRETLRADIDIGRFQPPGERNPDMNVVLVSHGLTLRVFLMRW 259

Query: 193 FKWTVDQFERLNNFDNCEFRVMQLGPAGEYSLLIHHTKEELQRWGLSPEMIADQQWRASA 252
           +KWTV QFE L N  N    VMQ G  G YSLL+HH+ +EL+ +GL+ +MI DQ+W+ +A
Sbjct: 260 YKWTVSQFEGLANLSNGGALVMQTGAGGRYSLLVHHSVDELREFGLTDDMIEDQKWQMTA 319



>Os10g0202200 
          Length = 218

 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 26/198 (13%)

Query: 76  SPYERTRATLREIGAAFPRHRVIGAREECRVREQDFGNFQVEERMRA-----------VK 124
           +PY     TL  +G AF   R+ G REE R+REQDFGNFQ  ++MR            V 
Sbjct: 8   TPYRHMLETLHGLGRAFEARRIAGVREEPRLREQDFGNFQDVDKMRQQRRRRQRARRHVL 67

Query: 125 ETXXXXXXXXXXXPEGESAADVFDRVASFLESLWR-----------DIDMGRLEQDASCE 173
           +              G +     D      +  W            D   GR+   +S  
Sbjct: 68  QMQQPRGRALGVRGGGCAEHHHVDHCHVRAQPAWARRGGAGAVRPDDAGSGRMTSRSSPC 127

Query: 174 TNLVIVSHGLTSR---VFLMKWFKWTVDQFERLNNFDNCEFRVMQLGPAGEYSLLIHHTK 230
           +     S  L++R   +F M+W+KW V QFE L N  N    VMQ G  G YSLL+HH+ 
Sbjct: 128 SRRARTS-SLSTRGHCIFSMRWYKWIVTQFEGLANLSNDGALVMQTGAGGRYSLLVHHSV 186

Query: 231 EELQRWGLSPEMIADQQW 248
           EEL+ +GL+ +MI DQ++
Sbjct: 187 EELRVFGLTDDMIEDQRF 204



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,261,396
Number of extensions: 356852
Number of successful extensions: 756
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 754
Number of HSP's successfully gapped: 3
Length of query: 295
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 195
Effective length of database: 11,814,401
Effective search space: 2303808195
Effective search space used: 2303808195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)