BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0108500 Os06g0108500|Os06g0108500
         (121 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0108500                                                      246   3e-66
Os03g0122600  Transcription factor, MADS-box domain containi...    64   2e-11

>Os06g0108500 
          Length = 121

 Score =  246 bits (627), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MEIDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKASKWSQCAIYVVAVQK 60
           MEIDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKASKWSQCAIYVVAVQK
Sbjct: 1   MEIDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKASKWSQCAIYVVAVQK 60

Query: 61  KLMDKISQLQQQEKILSEENALLLDQGKVQHAPIGAPAREMNQNQHVQDIDVDTELVIGR 120
           KLMDKISQLQQQEKILSEENALLLDQGKVQHAPIGAPAREMNQNQHVQDIDVDTELVIGR
Sbjct: 61  KLMDKISQLQQQEKILSEENALLLDQGKVQHAPIGAPAREMNQNQHVQDIDVDTELVIGR 120

Query: 121 R 121
           R
Sbjct: 121 R 121



>Os03g0122600 Transcription factor, MADS-box domain containing protein
          Length = 230

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 75/125 (60%), Gaps = 23/125 (18%)

Query: 3   IDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKASKWSQCAIYVVAVQKKL 62
           ++ +E Y RK+ GE L+ CS++ELH LE+++E+SL SIR +K               K L
Sbjct: 100 LEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKT--------------KLL 145

Query: 63  MDKISQLQQQEKILSEENALLLDQGKVQHAPIGAP----AREMNQNQHVQ----DIDVDT 114
            +++++L+++E  L ++N  L ++ K Q  P+ AP    A + N ++++     ++DV+T
Sbjct: 146 EEQVAKLREKEMKLRKDNEELREKCKNQ-PPLSAPLTVRAEDENPDRNINTTNDNMDVET 204

Query: 115 ELVIG 119
           EL IG
Sbjct: 205 ELFIG 209



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.127    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,449,254
Number of extensions: 109718
Number of successful extensions: 397
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 2
Length of query: 121
Length of database: 17,035,801
Length adjustment: 87
Effective length of query: 34
Effective length of database: 12,493,183
Effective search space: 424768222
Effective search space used: 424768222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 149 (62.0 bits)