Os03g0122600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor, MADS-box domain containing protein.
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Os03g0122600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor, MADS-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.39 | 0.346 | 12.7 | -2.67 | 1.2 | -0.386 | 1.57 | -4.48 | -0.123 | 2.68 | 18.39 | 5733 | -- | -- |
| 67.3 | 0.382 | 12.5 | -1.45 | 1.27 | -0.478 | 1.79 | -- | 0.0451 | 2.33 | 29.7 | 2924 | -- | -- |
| 59.75 | 0.363 | 12.6 | -2.12 | 0.916 | -0.575 | -- | -3.91 | 0.0781 | 2.73 | 18.39 | 5733 | -- | -- |
| 71.22 | 0.396 | 12.5 | -1.51 | 0.89 | -0.965 | -- | -- | 0.15 | 2.64 | 27.03 | 1602 | -- | -- |
| 91.67 | 0.448 | 12.5 | -1.9 | -- | -1.79 | -- | -4.87 | 0.236 | -- | 8.149 | 11905 | -- | -- |
| 76.43 | 0.41 | 12.5 | -1.59 | 1.16 | -- | 1.48 | -- | 0.149 | 2.68 | -- | -- | -- | -- |
| 84.05 | 0.429 | 12.5 | -1.63 | 1.17 | -- | -- | -- | 0.141 | 2.71 | -- | -- | -- | -- |
| 91.96 | 0.447 | 12.5 | -1.34 | -- | -1.69 | -- | -- | 0.329 | -- | 24.5 | 3 | -- | -- |
| 124.26 | 0.522 | 12.4 | -- | 0.603 | -1.33 | -- | -- | 0.471 | 2.61 | 23.7 | 4579 | -- | -- |
| 163.08 | 0.597 | 12.5 | -1.58 | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
| 153.81 | 0.58 | 12.5 | -- | 1.13 | -- | -- | -- | 0.322 | 2.69 | -- | -- | -- | -- |
| 137.06 | 0.545 | 12.4 | -- | -- | -1.89 | -- | -- | 0.547 | -- | 23.68 | 13 | -- | -- |
| 228.7 | 0.706 | 12.5 | -- | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.12 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 13 |
| 3 | 53.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 12 | 53.70 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 17 | 53.82 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 18 | 53.83 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 25 | 53.95 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 33 | 54.01 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 34 | 54.02 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 41 | 54.05 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 117 | 54.60 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 124 | 54.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 6 |
| 135 | 54.66 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 143 | 54.69 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 159 | 54.74 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 162 | 54.75 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 170 | 54.77 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 176 | 54.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 18 |
| 185 | 54.80 | temperature | 15 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 254 | 54.94 | temperature | 20 | 4320 | > th | dose dependent | sin | 18 | NA |
| 412 | 55.12 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 417 | 55.13 | temperature | 25 | 4320 | > th | dose independent | sin | 9 | NA |
| 440 | 55.16 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 14 |
| 459 | 55.17 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 476 | 55.19 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 493 | 55.20 | temperature | 25 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 505 | 55.21 | temperature | 25 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 513 | 55.22 | temperature | 25 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 514 | 55.22 | temperature | 15 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 547 | 55.25 | temperature | 25 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 583 | 55.27 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 734 | 55.41 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 735 | 55.41 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 18 |
| 938 | 55.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 11 |
| 939 | 55.57 | temperature | 20 | 4320 | > th | dose dependent | sin | 4 | NA |
| 942 | 55.57 | temperature | 10 | 14400 | > th | dose dependent | rect. | 19 | 10 |
| 971 | 55.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 17 |