BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0106900 Os06g0106900|AK067326
         (215 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0106900  Conserved hypothetical protein                      345   2e-95
Os02g0104200  Conserved hypothetical protein                      174   3e-44

>Os06g0106900 Conserved hypothetical protein
          Length = 215

 Score =  345 bits (884), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/215 (79%), Positives = 170/215 (79%)

Query: 1   MDKAXXXXXXXXXXXXXXXXXXDELDRQKQAEKKRRRLEKALANSAAIISELXXXXXXXX 60
           MDKA                  DELDRQKQAEKKRRRLEKALANSAAIISEL        
Sbjct: 1   MDKAGGNQGGKVLKKGKKKHAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKRQQKR 60

Query: 61  XXXXXLDDEGAAIAEAVALHVLIDEDSEEPCHLMLNNLRICNHWEDFVGFGFAPDSQGVD 120
                LDDEGAAIAEAVALHVLIDEDSEEPCHLMLNNLRICNHWEDFVGFGFAPDSQGVD
Sbjct: 61  EEQQRLDDEGAAIAEAVALHVLIDEDSEEPCHLMLNNLRICNHWEDFVGFGFAPDSQGVD 120

Query: 121 AYPSGKPTSVSHAYVPQLRWTNWGMSQTFSSWEQLTDCEAPLYQEALAQSDIHPGPIAIV 180
           AYPSGKPTSVSHAYVPQLRWTNWGMSQTFSSWEQLTDCEAPLYQEALAQSDIHPGPIAIV
Sbjct: 121 AYPSGKPTSVSHAYVPQLRWTNWGMSQTFSSWEQLTDCEAPLYQEALAQSDIHPGPIAIV 180

Query: 181 SPLQKRREDPFTIQGXXXXXXXXXXXXXXGQWNQQ 215
           SPLQKRREDPFTIQG              GQWNQQ
Sbjct: 181 SPLQKRREDPFTIQGEAVAAASSATESESGQWNQQ 215



>Os02g0104200 Conserved hypothetical protein
          Length = 223

 Score =  174 bits (442), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 108/167 (64%), Gaps = 5/167 (2%)

Query: 23  DELDRQKQAEKKRRRLEKALANSAAIISELXXXXXXXXXXXXXLDDEGAAIAEAVALHVL 82
           DELDRQKQAEKKRRRLEKALANSAAIISEL             LD+EGAAIAEAVALHVL
Sbjct: 23  DELDRQKQAEKKRRRLEKALANSAAIISELEKKKQKKREEQQRLDEEGAAIAEAVALHVL 82

Query: 83  IDEDSEEPCHLMLNNLRICNHWEDFVGFGFAPDSQGVDAY-PSGKPTSVSHAYVPQLRWT 141
           I EDS+EPCHLMLN  R CNHW+   GF FA D+QG D Y P G      H Y P+ R  
Sbjct: 83  IGEDSDEPCHLMLNKHRRCNHWDHSAGFDFAVDAQGADIYPPDGLIQCADHVYAPKGRCI 142

Query: 142 NWGMSQTFSSWEQLTD--CEAPLYQEALAQSDIHPGPIA--IVSPLQ 184
           +WG+ Q   SW ++ D   +AP YQ    QS   PG IA   VS LQ
Sbjct: 143 DWGIGQPLPSWGEVKDLQLQAPCYQGMFHQSVACPGFIAAQAVSSLQ 189



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.131    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,120,646
Number of extensions: 242359
Number of successful extensions: 463
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 2
Length of query: 215
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 118
Effective length of database: 11,971,043
Effective search space: 1412583074
Effective search space used: 1412583074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)