Os06g0106900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0106900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.17 | 0.164 | 11.2 | -0.129 | 0.65 | 0.219 | -0.18 | -0.141 | 0.0558 | 21.7 | 24.1 | 1114 | -- | -- |
| 12.13 | 0.162 | 11.2 | -0.077 | 0.642 | 0.207 | -0.205 | -- | 0.0647 | 21.8 | 23.77 | 1003 | -- | -- |
| 12.21 | 0.163 | 11.2 | -0.141 | 0.639 | 0.221 | -- | -0.194 | 0.0439 | 21.8 | 23.82 | 1002 | -- | -- |
| 12.29 | 0.163 | 11.2 | -0.0694 | 0.643 | 0.205 | -- | -- | 0.0662 | 21.8 | 23.8 | 992 | -- | -- |
| 28.6 | 0.249 | 11.2 | -0.135 | -- | 0.454 | -- | -0.281 | -0.000901 | -- | 25.3 | 775 | -- | -- |
| 14.19 | 0.177 | 11.2 | 0.0045 | 0.677 | -- | -0.183 | -- | 0.158 | 21.9 | -- | -- | -- | -- |
| 14.32 | 0.177 | 11.2 | 0.0115 | 0.678 | -- | -- | -- | 0.159 | 21.9 | -- | -- | -- | -- |
| 28.15 | 0.247 | 11.2 | -0.137 | -- | 0.544 | -- | -- | -0.0297 | -- | 25.2 | 761 | -- | -- |
| 12.41 | 0.164 | 11.2 | -- | 0.641 | 0.191 | -- | -- | 0.0752 | 21.8 | 23.76 | 992 | -- | -- |
| 41.92 | 0.303 | 11.2 | 0.0194 | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
| 14.32 | 0.177 | 11.2 | -- | 0.678 | -- | -- | -- | 0.157 | 21.9 | -- | -- | -- | -- |
| 28.68 | 0.249 | 11.2 | -- | -- | 0.528 | -- | -- | -0.0165 | -- | 25.26 | 743 | -- | -- |
| 41.93 | 0.302 | 11.2 | -- | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.07 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 3 |
| 2 | 12.08 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 4 | 12.09 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 5 | 12.11 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 6 | 12.11 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 7 | 12.12 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 11 | 12.14 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 34 | 12.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 35 | 12.22 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 36 | 12.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 38 | 12.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 41 | 12.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 9 |
| 42 | 12.25 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 52 | 12.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 86 | 12.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 100 | 12.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 145 | 12.32 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 162 | 12.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 178 | 12.35 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 212 | 12.37 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 218 | 12.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 226 | 12.38 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 261 | 12.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 285 | 12.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 291 | 12.40 | temperature | 25 | 1440 | < th | dose independent | rect. | 4 | 18 |
| 319 | 12.41 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 353 | 12.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 367 | 12.42 | temperature | 25 | 1440 | > th | dose independent | rect. | 4 | 18 |
| 375 | 12.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 433 | 12.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 466 | 12.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 467 | 12.45 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 552 | 12.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 557 | 12.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 582 | 12.47 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 648 | 12.48 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 690 | 12.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 753 | 12.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 755 | 12.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 823 | 12.51 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 926 | 12.52 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 21 |
| 934 | 12.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |